Vibrio gigantis: MID13_19230
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Entry
MID13_19230 CDS
T08202
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
vgi
Vibrio gigantis
Pathway
vgi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vgi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MID13_19230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vgi03019
]
MID13_19230
Enzymes [BR:
vgi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MID13_19230
Messenger RNA biogenesis [BR:
vgi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MID13_19230
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
NAT10_TcmA_helicase
P-loop_SecA
Helicase_C_2
AAA_19
Motif
Other DBs
NCBI-ProteinID:
ULN67240
LinkDB
All DBs
Position
2:854784..856055
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AA seq
423 aa
AA seq
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MSESTKSFNQLGLSEHLLATLSELNFTAPTSVQEQAIPLVLEGKDVLAGAQTGTGKTAAF
GLPIIQRLIETKDNVIPNPKLVRALVLVPTRELAQQVFDNLTSYAKGTDIKVVVAYGGVS
MKVQTDKLRGGADILVATPGRLIDHMFTKNIMLSQTEVLVLDEADRMLDMGFMPDIKRIL
SRMNEVRQTLFFSATFDTKIKAIAYRMMKSPSEIQVTPKNSTADTVTQMVYPVDKSRKSE
LLAYLIGSKNWQQVLVFTKTKQGTDALVKELKLDGIKAASINGDKSQGARQKALDDFKSG
KVRALIATDVAARGIDIQQLEQVVNYDMPFKAEDYVHRIGRTGRAGNSGLAISLMSQDEA
YLLGDIERLLDTRLPQEWLEGFEPSLEKDLAPDRSGRSKSRSSEKRKMKAKLKIHQNRGK
ARR
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaatctacaaaatcttttaaccaactaggattatctgagcaccttcttgccacg
ttgtctgagcttaactttacggctcctaccagtgttcaagaacaagcgattccattggta
ttagaaggcaaagacgtactggctggtgctcaaacgggtacaggtaaaacagccgcattt
ggtttaccgattattcaaagattaatcgaaactaaagacaacgttattcccaatccgaag
ttagttcgtgcattggtgctagtaccaacacgtgaactagcacagcaggtgtttgacaac
ctcactagctacgcgaagggcacagacattaaagtggttgtagcgtacggcggcgtaagc
atgaaggttcaaaccgacaaattacgtggtggcgcagatatcttagtcgcgacacctggc
cgtttgattgaccacatgtttactaaaaacatcatgttaagccaaacagaagtgttggta
ttggatgaagctgatcgcatgttggacatgggcttcatgccagacatcaagcgcattctt
tcgcgtatgaatgaagtccgccaaacgttgttcttctcggcaaccttcgataccaaaatc
aaagcgattgcgtaccgaatgatgaagtcgccaagtgaaattcaagtaacgccgaaaaac
agcacggctgacaccgtaacacagatggtttacccggtagataaatcgcgtaaaagtgaa
ctgttggcgtatttgattggctcaaaaaattggcaacaagtattggtgttcacaaagact
aagcagggtacggatgcgttagtaaaagagcttaagctagacggtattaaagcagcatca
atcaatggtgataagagccaaggtgcgcgccaaaaagcattggatgatttcaaatcgggc
aaagtgcgcgcgctgatcgcaacggatgtagcagcgcgtgggatcgatattcagcagcta
gaacaagttgtgaattacgatatgccttttaaagcagaagactacgttcaccgtattggt
cgtacaggtcgtgcaggtaacagcggtcttgcgatttcattgatgagtcaggacgaagct
tacctattgggtgatattgaacgactactggatacgcgcttgcctcaagagtggctagag
ggctttgaaccaagcctagagaaagaccttgcacctgatcgcagtggacgtagcaaaagt
cgttcgtcagaaaaacgtaagatgaaagcgaagcttaagattcaccaaaaccgcggtaaa
gcacgtcgctaa
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