Vibrio gigantis: MID13_21500
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Entry
MID13_21500 CDS
T08202
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
vgi
Vibrio gigantis
Pathway
vgi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vgi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MID13_21500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vgi03019
]
MID13_21500
Enzymes [BR:
vgi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MID13_21500
Messenger RNA biogenesis [BR:
vgi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MID13_21500
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
ERCC3_RAD25_C
AAA_19
AAA_22
DEDD_Tnp_IS110
Motif
Other DBs
NCBI-ProteinID:
ULN66160
LinkDB
All DBs
Position
2:complement(1358424..1360073)
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AA seq
549 aa
AA seq
DB search
MSFTSLGLSEPILKAIEAQGYDKPSPIQEKAVPAVLTGKDVMAAAQTGTGKTAGFTLPIL
EMLSKGPRVRQNQVRALVLTPTRELAAQVNGSVVKYGINLPLTSTVVFGGVKINPQMQKL
RKGSDVLVATPGRLLDLYNQNAVRFDQLEILVLDEADRMLDMGFIRDIRKILAFLPKKRQ
NLLFSATFSDDIRSLAKGLVNNPVEISVSPANSTAKTVEQSIYPVDKKKKSAMLAKLIKD
NDWRQVLVFSKTKHGANKLARFLEEQDITAAPIHGNKSQGARTKALENFKTGKVRVLVAT
DIAARGIDIPQLPQVVNFDLPHVSEDYVHRIGRTGRAGEVGKAISLVCADEVGELFGIER
LIQQVLERRELEGFSPVNKLPESRLDSRPIKPKKPKKAKQPREHADGQRSGDNARGHKPA
GKNKRHVAGNGSAPKRKPTAGKKPTENNSAATGEDKSVRNNGSNFKRGNAGNKPAANNTS
SQNTLSKPSGAGKSNGTGKPNNAGKPAGKPKKSGYGGSYGPSKSSNKPAGSKPSTNKPSR
SRSKPAPQK
NT seq
1650 nt
NT seq
+upstream
nt +downstream
nt
atgagttttacctcccttggcctttctgaaccgatccttaaagctattgaagcacaaggt
tacgataagccatcaccaatacaagagaaagccgtgccagctgtcctaacgggcaaagat
gtgatggccgctgctcaaacaggtacaggtaaaactgcaggcttcacgctacctattctt
gaaatgttatcgaaaggccctcgcgtacgtcagaatcaagttcgtgcgctagtgctaacg
ccaactcgtgagcttgctgcacaagtgaatggaagcgtagtgaagtacggtattaactta
ccgcttacttctacggtagtgtttggtggcgtgaagattaaccctcagatgcaaaaactg
cgtaaaggtagtgacgtgctggtggcaacaccaggtcgtctgcttgacctatacaaccaa
aatgcagtgcgttttgaccaactagaaatcctagtgctagatgaagcggaccgcatgcta
gacatgggtttcatccgcgatatccgtaagatcttggctttcttgcctaagaagcgtcag
aacctactgttctcagcgacgttctctgatgatatccgcagcttagcgaaaggcttggtg
aacaatcctgttgagatttcagtcagtcctgcaaactctacggcaaaaacggttgagcaa
agcatctatccagtagataaaaagaaaaagagtgcaatgctagcgaagctaatcaaagat
aacgattggcgacaagttttggtgttcagcaaaacaaaacacggtgcaaataagcttgcg
cgttttcttgaagagcaagacatcactgcagcacctattcatggtaacaagagccaaggt
gcacgtactaaagccttagagaactttaaaacaggtaaggtacgagtacttgttgcgact
gatatcgccgctcgtggtattgatatcccgcaactgcctcaagtggttaacttcgatctt
ccacatgtatcagaagactatgtacaccgtataggtcgtactggccgtgctggtgaagtt
ggtaaagcgatttcattggtttgtgctgatgaggtaggtgagttgttcggtattgaacgc
cttattcaacaagtgttagagcgtcgtgaacttgaaggtttctctcctgtaaacaagtta
cctgaatctcgtttggattcccgtccaattaagcctaagaagccgaagaaagcaaaacaa
ccacgtgagcatgctgatgggcaacgctctggagataacgctcgtgggcataagccagca
ggcaagaacaagcgtcatgtagccggtaatggatctgcgccaaagcgtaagccaacggct
ggaaagaagccgactgaaaacaattcagccgcgacaggtgaagataaatcagtgagaaac
aacggcagcaactttaagcgcggtaatgcaggcaataaacctgccgcaaataacacaagt
tctcagaacactttgagcaaaccaagcggtgcaggtaaatctaacggtacaggtaagcca
aacaacgcgggtaaacctgcaggcaaacctaagaagtcgggttacggtggcagctatggc
ccaagcaaatcatcgaacaagccagcaggaagcaagccttcgacaaacaaaccgtctaga
agccgctctaagccagctcctcaaaagtaa
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