Vibrio gigantis: MID13_23255
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Entry
MID13_23255 CDS
T08202
Name
(GenBank) helix-turn-helix domain-containing protein
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
vgi
Vibrio gigantis
Pathway
vgi03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
vgi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
MID13_23255
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
vgi03000
]
MID13_23255
03400 DNA repair and recombination proteins [BR:
vgi03400
]
MID13_23255
Enzymes [BR:
vgi01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
MID13_23255
Transcription factors [BR:
vgi03000
]
Prokaryotic type
Helix-turn-helix
AraC family
MID13_23255
DNA repair and recombination proteins [BR:
vgi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
MID13_23255
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HTH_AraC
HhH-GPD
Motif
Other DBs
NCBI-ProteinID:
ULN66479
LinkDB
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Position
2:complement(1752495..1753871)
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AA seq
458 aa
AA seq
DB search
MSKNIHHNSTLTSEQCHLARYARDARFDGMFFTAVKTTGIFCRPICPASPPKEENVEYFS
HQAQALKAGYRPCLRCRPDSAPFSPAWKGVETTFLRAMQLIDNGALNSGSIVDLATRLGI
SDRYLRTLFNNYIGVSPKQYSLYSQLMFAKQLLHTSSMSITDVGFASGFNSTRRFNDAFQ
KELQLSPSQIRRTKPSDTLSNHIQLGFNEPLDWKHLLGFYRRRMIEGLEEVGEDCYKRTV
NVNGAKGWFKATLAKENRLDIEFELDDISQLRSLITNIRRMFDLDVDIVKVETFFATIDP
NLVAKSGIRIPGVWSAWEAGVRAILGQQVSVTAAIGQLNLLVKELSEAHEEVSFPMPQQI
AEADLSFLRMPGSRKETLKRFAEYMVDNEAEHPSKWIALKGIGPWTIQYALLRGLSEPNH
LLVGDLVVKKFIEHRPTINIESVSPWGSYATFHCWNQS
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaaaatattcatcacaacagtaccttaacgagtgagcagtgccatttggctcga
tatgcgcgagatgctcgctttgatggtatgttttttacagcggtgaaaacgacagggatt
ttttgtcgtccgatttgcccagcaagcccgcccaaagaagaaaacgtcgaatatttttct
catcaagctcaagcattgaaagcggggtatcgtccttgtttgcgttgccgaccagacagt
gcgcctttctctccggcatggaagggcgttgaaaccacttttttacgtgcgatgcagttg
attgataacggcgcgctgaattcaggatctatcgttgaccttgcaacgcggttaggtatt
tccgatcgttacttacggaccctattcaacaattacatcggtgtgtcacccaagcagtac
agcctttatagccaattgatgttcgccaaacagttgctacataccagcagtatgagcatt
actgatgtcggctttgcgagtggctttaatagcacacgtcgctttaacgatgctttccaa
aaagagttgcagctttcgccgagccaaattcgacgaacgaaaccaagtgacacactgagt
aatcatattcagcttggttttaatgagcctttagactggaagcacttgttgggtttttat
cgacgaagaatgattgaaggcttagaagaggttggcgaagattgttataagcgcacggtg
aatgtgaacggggcgaaggggtggttcaaggcgactttagccaaagagaaccgcttagat
attgagtttgagttggatgatataagccaattaagaagcttgattacgaatatacgacgt
atgttcgatcttgatgtcgatattgtaaaggtcgagactttctttgcgacgatcgatcct
aacttggtggctaagagtggtatccgtattcctggcgtgtggagtgcttgggaagccgga
gtgagagcgattttggggcagcaagtctcggtaaccgctgcaattggtcagctcaattta
ttggtcaaagagctttctgaagcacatgaggaggttagctttcccatgccgcaacagata
gcggaggctgatttgagcttcttgagaatgccgggaagccgcaaagagaccttaaagcgt
tttgctgaatacatggtcgacaatgaagcggagcatccttctaaatggattgcgctaaaa
ggcattgggccttggacgattcaatatgcactgcttcgtggtttaagtgagcctaaccat
ctgttggttggcgatttagtggtgaagaagtttattgagcatcgccccaccatcaatata
gagagtgtttcgccttggggtagttacgcgacgttccactgttggaatcagtcttaa
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