Variibacter gotjawalensis: GJW-30_1_00117
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Entry
GJW-30_1_00117 CDS
T05320
Name
(GenBank) eukaryotic DNA topoisomerase I, catalytic core
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
vgo
Variibacter gotjawalensis
Brite
KEGG Orthology (KO) [BR:
vgo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vgo03032
]
GJW-30_1_00117
03400 DNA repair and recombination proteins [BR:
vgo03400
]
GJW-30_1_00117
Enzymes [BR:
vgo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
GJW-30_1_00117
DNA replication proteins [BR:
vgo03032
]
Prokaryotic type
DNA Topoisomerases
GJW-30_1_00117
DNA repair and recombination proteins [BR:
vgo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
GJW-30_1_00117
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
TetR_C_18
DUF3037
Motif
Other DBs
NCBI-ProteinID:
BAT57610
UniProt:
A0A0S3PNV7
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Position
141921..142979
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AA seq
352 aa
AA seq
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MALVETLPAPDANTRKLARSLKLKHVAAETLSIRRRRLGERFSYQTAKGITIKDRETLAR
LKSLAVPPAYEDVLYAEDPRAHIQAIGRDAAGRLQYRYHPDWQKVREMRKSARLARLAEA
LPRIRRAVGRYLGEAEPSRALALAAVVDLVARSAIRPGSESYAKLRGTRGAATLLKSNVS
VQGDTITLKFRAKGGKNVVKSFAAPRLCEALAVLRQVPGRRLFQFRNEAGDVRMVTAREV
NVFLREIAETRISLKDFRTLLASVSVLEALAKVTPATSKRARRSQVLEAIRAAAEDLSNT
PAICAKSYVHETVVAAFEEGVLEEFADALRATRSPAKREQVLAEVIATAAAA
NT seq
1059 nt
NT seq
+upstream
nt +downstream
nt
atggcgcttgtcgagaccctgcccgcccccgacgccaatacccgcaagctcgcgcggagc
cttaaacttaaacacgtcgccgccgaaaccctaagcatccgccgccggcggctcggtgag
cgcttcagctaccagaccgccaaaggcatcacgatcaaggatcgcgagaccctagcgcgt
ctgaaaagcctcgcggtgccgcccgcctacgaagacgtgctctacgccgaggaccctcgc
gcccacattcaggcgatcgggcgcgatgccgcaggacgtttgcaatatcggtatcatccg
gattggcagaaggtccgcgagatgcgcaaatccgcgcgcctcgcgcggctcgccgaagcg
ctgccacgtatccgccgcgccgtcggtcgttatcttggtgaagccgaaccaagccgcgcg
ttggcgcttgccgccgtcgtcgatcttgtcgcgcgtagcgccatccggcccggcagcgaa
agctacgcgaagctgcgcggcacgcgcggcgcagcgacgctgctgaagtcgaacgtcagt
gtgcagggcgacacgatcacgctgaaattccgcgccaagggcggcaaaaacgtcgtgaag
agctttgcggcacctcgcctgtgcgaggcgctcgcggtgctccgccaagtgccgggccgc
cgcctcttccaattccgcaacgaggccggcgacgtccgcatggtgacggcacgcgaagtc
aacgtattcctccgtgagattgccgaaacacgcatttcattgaaggactttcgcacgctt
cttgcgtccgtcagcgtgctcgaggcgctcgccaaggtaaccccggcgacctcgaaacgc
gctcggcgcagccaggtgctggaagccatccgggccgctgccgaggatctttccaacaca
cccgcgatctgcgcaaaaagctacgtccacgagacggtggtcgccgccttcgaggagggc
gtcttggaagaattcgccgacgcgctgcgggcgacccgctcgccggccaagcgcgagcag
gtcctggccgaggtcatcgccacggctgctgcggcctga
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