KEGG   Variibacter gotjawalensis: GJW-30_1_00880
Entry
GJW-30_1_00880    CDS       T05320                                 
Symbol
rhlE_1
Name
(GenBank) ATP-dependent RNA helicase RhlE
  KO
K11927  ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
Organism
vgo  Variibacter gotjawalensis
Pathway
vgo03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:vgo00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    GJW-30_1_00880 (rhlE_1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vgo03019]
    GJW-30_1_00880 (rhlE_1)
Enzymes [BR:vgo01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     GJW-30_1_00880 (rhlE_1)
Messenger RNA biogenesis [BR:vgo03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     GJW-30_1_00880 (rhlE_1)
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_22 Utp25_C HEM4 SUa-2TM P-loop_SecA
Other DBs
NCBI-ProteinID: BAT58356
UniProt: A0A0S3PR19
LinkDB
Position
927684..929591
AA seq 635 aa
MTSFNDFGLAEPILRALAEEKYVTPTPIQNDSLPLVISGRDLIGIAQTGTGKTAAFALPI
LNRLATTPRPLEKKSCRVLVLAPTRELSGQISDSFRTYARHMRVSVGLAIGGVPMGRQVR
SMMNGVDILVATPGRLLDLVRGNAVRLGSIEMLVLDEADRMLDMGFINDIRKIVAKVPAE
RQTLLFSATMPREIADLADSLLRDPARVAVTPVAKTADKVAQRVIHTTKSQKPDLLVATL
NSEVKDRAIVFTRTKHGADKVVKFLEKAGISSDALHGNKSQGQRERALSNFRDGRSKILV
ATDLAARGIDVDGVSHVINFDIPNEPESYVHRIGRTARAGAEGIAISFCDGEEASYLRSI
ERLIKMTIPAEGEPPAHSHGARKPQQRGGHRQRFGGGERREHRGDGEGRPQREARPHGEG
RPQRDARPHGEGRPQRDARPNGEGRPQRDARPNGEGRPQRDARPHGEGRPQRDARPQGEG
RPQRDARPHGEGRPQRDGQRNNEHRAGENRGGENRGGERQWQPRQGETPRYGEAAGERRD
RPNHSNRPHHSAAEGERSKGERSHGAPGKNGGRPHRGQRPQNGNRPDHSRKGDQQNAGGQ
RGTVARDGEIGSVAFLKRDDKPYRQRPRGARPANA
NT seq 1908 nt   +upstreamnt  +downstreamnt
ttgacttcatttaacgatttcggcctcgcagagccgattcttcgcgcacttgccgaagag
aagtatgtcacccccacgccgattcagaacgattcgctcccgctggtgatcagcggccgc
gatctcatcggcattgcgcagaccggtaccggcaagaccgccgcgttcgcgctccccatt
ctcaaccgtctcgccacgacgccgcgcccgctcgagaagaagagctgccgcgtcctcgtt
ctcgcaccgacgcgcgaactctcaggccagatctccgacagcttccgcacctacgcgcgc
cacatgcgcgtttcggtcggtctcgcgatcggcggcgtgccgatgggccgtcaggtccgc
tcgatgatgaacggcgtcgatattctcgtcgcaacgccgggccgtttgctcgacctcgtg
cgcggcaacgccgtgcgtttgggctcgatcgagatgctggtgctcgacgaagccgaccgc
atgctcgacatgggcttcatcaacgacatccgtaagatcgtcgcgaaggttccggccgaa
cgtcagacgctgctcttctcggcaacgatgccgcgcgagatcgccgatcttgccgattcg
ctgctgcgcgatccggcgcgtgtcgccgtgacgccggttgctaagaccgccgacaaggtt
gcgcagcgcgtgatccacacgacgaagtctcagaagccggaccttctggtcgcgacgctg
aacagcgaagtgaaggaccgcgccatcgtcttcacgcgcaccaagcatggcgccgacaag
gtcgtgaagttcctggaaaaggccggcatctcgtccgacgcgttgcacggcaacaagtcg
cagggccagcgcgagcgtgcgctttcgaacttccgtgacggccgctcgaagatcctggtt
gcgaccgatcttgcggcgcgcggcatcgacgtcgacggcgtcagccacgtcatcaacttc
gacatcccgaacgagcccgagagctacgtccaccgcatcggccgcaccgcgcgcgccggc
gccgagggcatcgcgatctcgttctgcgatggcgaggaggcttcgtacctccgcagcatc
gaacgtctcatcaagatgacgatcccggccgaaggtgagccgccggcgcacagccacggc
gcacgcaagccgcagcagcgtggcggtcatcgtcaacgcttcggcggtggcgagcgtcgc
gaacatcgtggtgacggcgaaggccgcccgcagcgcgaggcacgtccgcacggcgaaggg
cgcccgcagcgcgacgcacgtccgcacggcgaaggccgcccgcagcgtgatgcacgtccg
aatggcgagggccgtccgcagcgtgatgcacgtccgaatggcgagggccgtccgcagcgt
gatgcacgtccgcacggagaaggccgcccgcagcgtgatgcacgtccgcagggtgagggt
cgtccgcaacgtgacgcgcgtccgcacggtgaaggccgtccgcagcgcgacggtcaacgc
aacaacgagcaccgtgccggcgagaatcgtggcggcgaaaaccgcggcggtgagcgtcag
tggcagccgcgccagggtgaaaccccgcgttatggcgaggctgccggtgaacgccgcgat
cgcccgaaccatagcaatcgcccgcatcacagcgccgccgaaggtgagcgctcgaagggc
gagcgttcgcatggcgccccgggcaagaacggcggccgcccgcatcgcggccagcgcccg
caaaacggcaatcgtccggaccattcccgcaagggcgaccagcaaaacgccggtggccag
cgcggaacggttgcgcgagacggcgaaataggctctgtcgcgttcctgaaaagggatgat
aagccgtatcgccagcgcccgcgcggcgcgcgcccggcaaacgcttaa

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