Variibacter gotjawalensis: GJW-30_1_00880
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Entry
GJW-30_1_00880 CDS
T05320
Symbol
rhlE_1
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
vgo
Variibacter gotjawalensis
Pathway
vgo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vgo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GJW-30_1_00880 (rhlE_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vgo03019
]
GJW-30_1_00880 (rhlE_1)
Enzymes [BR:
vgo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GJW-30_1_00880 (rhlE_1)
Messenger RNA biogenesis [BR:
vgo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GJW-30_1_00880 (rhlE_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Utp25_C
HEM4
SUa-2TM
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
BAT58356
UniProt:
A0A0S3PR19
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All DBs
Position
927684..929591
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AA seq
635 aa
AA seq
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MTSFNDFGLAEPILRALAEEKYVTPTPIQNDSLPLVISGRDLIGIAQTGTGKTAAFALPI
LNRLATTPRPLEKKSCRVLVLAPTRELSGQISDSFRTYARHMRVSVGLAIGGVPMGRQVR
SMMNGVDILVATPGRLLDLVRGNAVRLGSIEMLVLDEADRMLDMGFINDIRKIVAKVPAE
RQTLLFSATMPREIADLADSLLRDPARVAVTPVAKTADKVAQRVIHTTKSQKPDLLVATL
NSEVKDRAIVFTRTKHGADKVVKFLEKAGISSDALHGNKSQGQRERALSNFRDGRSKILV
ATDLAARGIDVDGVSHVINFDIPNEPESYVHRIGRTARAGAEGIAISFCDGEEASYLRSI
ERLIKMTIPAEGEPPAHSHGARKPQQRGGHRQRFGGGERREHRGDGEGRPQREARPHGEG
RPQRDARPHGEGRPQRDARPNGEGRPQRDARPNGEGRPQRDARPHGEGRPQRDARPQGEG
RPQRDARPHGEGRPQRDGQRNNEHRAGENRGGENRGGERQWQPRQGETPRYGEAAGERRD
RPNHSNRPHHSAAEGERSKGERSHGAPGKNGGRPHRGQRPQNGNRPDHSRKGDQQNAGGQ
RGTVARDGEIGSVAFLKRDDKPYRQRPRGARPANA
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
ttgacttcatttaacgatttcggcctcgcagagccgattcttcgcgcacttgccgaagag
aagtatgtcacccccacgccgattcagaacgattcgctcccgctggtgatcagcggccgc
gatctcatcggcattgcgcagaccggtaccggcaagaccgccgcgttcgcgctccccatt
ctcaaccgtctcgccacgacgccgcgcccgctcgagaagaagagctgccgcgtcctcgtt
ctcgcaccgacgcgcgaactctcaggccagatctccgacagcttccgcacctacgcgcgc
cacatgcgcgtttcggtcggtctcgcgatcggcggcgtgccgatgggccgtcaggtccgc
tcgatgatgaacggcgtcgatattctcgtcgcaacgccgggccgtttgctcgacctcgtg
cgcggcaacgccgtgcgtttgggctcgatcgagatgctggtgctcgacgaagccgaccgc
atgctcgacatgggcttcatcaacgacatccgtaagatcgtcgcgaaggttccggccgaa
cgtcagacgctgctcttctcggcaacgatgccgcgcgagatcgccgatcttgccgattcg
ctgctgcgcgatccggcgcgtgtcgccgtgacgccggttgctaagaccgccgacaaggtt
gcgcagcgcgtgatccacacgacgaagtctcagaagccggaccttctggtcgcgacgctg
aacagcgaagtgaaggaccgcgccatcgtcttcacgcgcaccaagcatggcgccgacaag
gtcgtgaagttcctggaaaaggccggcatctcgtccgacgcgttgcacggcaacaagtcg
cagggccagcgcgagcgtgcgctttcgaacttccgtgacggccgctcgaagatcctggtt
gcgaccgatcttgcggcgcgcggcatcgacgtcgacggcgtcagccacgtcatcaacttc
gacatcccgaacgagcccgagagctacgtccaccgcatcggccgcaccgcgcgcgccggc
gccgagggcatcgcgatctcgttctgcgatggcgaggaggcttcgtacctccgcagcatc
gaacgtctcatcaagatgacgatcccggccgaaggtgagccgccggcgcacagccacggc
gcacgcaagccgcagcagcgtggcggtcatcgtcaacgcttcggcggtggcgagcgtcgc
gaacatcgtggtgacggcgaaggccgcccgcagcgcgaggcacgtccgcacggcgaaggg
cgcccgcagcgcgacgcacgtccgcacggcgaaggccgcccgcagcgtgatgcacgtccg
aatggcgagggccgtccgcagcgtgatgcacgtccgaatggcgagggccgtccgcagcgt
gatgcacgtccgcacggagaaggccgcccgcagcgtgatgcacgtccgcagggtgagggt
cgtccgcaacgtgacgcgcgtccgcacggtgaaggccgtccgcagcgcgacggtcaacgc
aacaacgagcaccgtgccggcgagaatcgtggcggcgaaaaccgcggcggtgagcgtcag
tggcagccgcgccagggtgaaaccccgcgttatggcgaggctgccggtgaacgccgcgat
cgcccgaaccatagcaatcgcccgcatcacagcgccgccgaaggtgagcgctcgaagggc
gagcgttcgcatggcgccccgggcaagaacggcggccgcccgcatcgcggccagcgcccg
caaaacggcaatcgtccggaccattcccgcaagggcgaccagcaaaacgccggtggccag
cgcggaacggttgcgcgagacggcgaaataggctctgtcgcgttcctgaaaagggatgat
aagccgtatcgccagcgcccgcgcggcgcgcgcccggcaaacgcttaa
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