Variibacter gotjawalensis: GJW-30_1_02028
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Entry
GJW-30_1_02028 CDS
T05320
Symbol
polC
Name
(GenBank) DNA polymerase III PolC-type
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
vgo
Variibacter gotjawalensis
Pathway
vgo03030
DNA replication
vgo03430
Mismatch repair
vgo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vgo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GJW-30_1_02028 (polC)
03430 Mismatch repair
GJW-30_1_02028 (polC)
03440 Homologous recombination
GJW-30_1_02028 (polC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vgo03032
]
GJW-30_1_02028 (polC)
03400 DNA repair and recombination proteins [BR:
vgo03400
]
GJW-30_1_02028 (polC)
Enzymes [BR:
vgo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
GJW-30_1_02028 (polC)
DNA replication proteins [BR:
vgo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
GJW-30_1_02028 (polC)
DNA repair and recombination proteins [BR:
vgo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
GJW-30_1_02028 (polC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
FAN1_HTH
VRR_NUC
Rv2179c-like
TPR_14
Motif
Other DBs
NCBI-ProteinID:
BAT59495
UniProt:
A0A0S3PU79
LinkDB
All DBs
Position
2085034..2087184
Genome browser
AA seq
716 aa
AA seq
DB search
MKLPVLPAYYYHDHFGEMLRHVVACYGSVLTADHIAFIDDFKRLSKDAQCLLIRMVNRKG
RIFRHTAFRYAEIADCAGALSELMQRGYVRALGEGDYAAFAKCVSKEALCKAAEDHVDVR
KSWSKAKLVAFVLGNIPFAVSYETCAGRDFVALGETESIEFLLFLYFGKTEDSLKSFALR
DLGILRTNEGVQPSARFTDGEEASACFYYGKLLDQLDAGDEPHYHSAFDALRRGPDAGTD
YVLDLRSRAAHRVGLYFERAGEQDTALQLYRMGSSPECNERLARLLYASGDKAGAEALLR
RMIDDPGSDEEFIFASDYYARKFNGRRTAACTELLRSAQSITVDDTWRGNPEAGVAGVLR
RGGASVFYAENTLWQCLFGLVFWDELFESGQLHSSFNWLPHCLKDRSFARRFASEIKVKL
EKVAASTAQTLILKTIAARWGKPNGVFAWECVNVDALSALLRGADPAGIADILRLMCEDY
RAMRDGFPDLMLVDNGAISFLEVKAEGDVIRRNQLTRLRQLGNAGIAAHIGLVDFRFDPA
QDYVVVDIETTGGWAGGDRITEIGAVKIRNHAVVAEWHSLINPQRSIPAKITQLTGITNA
MVRDAPLFGDVADSFINFMDDGIFVAHSVNFDYGFIAHEYERIGRRFRFPKLCTCASMRR
RYPGHKSYGLANLCDAYAIDLTDHHRALADARAAAQLLNLINRQREAAIARDDLAA
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atgaagctgcccgtgctgcccgcctactactatcacgaccacttcggcgaaatgctccgc
catgtggtcgcgtgttacggatcggtgctgaccgcagatcacatcgcattcatcgacgac
ttcaaacgcctttccaaagacgcgcaatgcctgctgatcaggatggtcaatcgcaagggg
cgcatctttcgccacaccgcatttcgctacgctgaaatcgctgattgcgcaggcgcgctg
tccgaactgatgcagcgcggatatgtgcgtgcgctcggcgagggcgactatgcggcgttt
gcgaaatgcgtttctaaagaagctctgtgcaaagctgcagaggaccacgtcgatgtccgc
aaatcgtggtcgaaggcgaagcttgtcgcgttcgttctcggcaacattcccttcgcggtg
agctacgagacatgcgccggccgggacttcgtcgcgctcggtgagaccgagtcgatcgag
tttttgctctttctgtatttcggaaaaaccgaggacagcctcaagagcttcgcgctgcgt
gatctcggcatcctgcgaaccaatgaaggcgttcagcccagtgcccgctttacggacggt
gaggaggcgagcgcctgtttctactacggcaagcttctcgatcagctcgatgccggagac
gagcctcattaccattccgctttcgatgcgttgcgccgcggccccgatgcagggaccgac
tatgtgctcgatctgcgcagccgtgcggcgcaccgcgtcgggctctacttcgagcgtgcc
ggcgagcaggataccgcgctgcagctgtatcgcatgggatcgtcgccggaatgcaacgag
cggctcgcccgccttctttatgcgtcgggcgataaggccggcgcggaggcactgctgcgc
cggatgattgacgatcccgggagcgatgaagaatttatcttcgcgagcgattactacgcg
cgcaagttcaacggcaggcgaacggctgcgtgcacggaactgctgcggtcggctcagtcg
atcacggtcgacgacacgtggcgcggcaatccggaagccggggtcgctggcgtcctgcgg
cgcggcggggcctcggttttctatgccgagaacacgctctggcagtgtctattcggactt
gttttctgggacgagctgttcgagagcggtcaactccacagtagtttcaattggctgccg
cattgtttgaaagaccgatctttcgcgcgccgctttgcaagcgaaatcaaggtcaagctc
gaaaaggttgccgcgtcgaccgcgcagacattgatcctcaagacgatcgcggcacggtgg
ggcaaacccaacggcgtatttgcctgggagtgcgtcaacgtcgacgcgctgtcggctttg
ctgcggggcgccgatccggccggaattgccgatatcctccgtctcatgtgcgaagattat
cgcgcgatgcgcgacgggtttccggatctgatgctcgttgataacggtgcgatctcgttc
ctcgaggtcaaagccgaaggggatgtcatccgccgcaatcaattgacgcggctacggcaa
cttggcaatgccgggatcgcggcgcatatcgggcttgtcgatttccgcttcgatccggct
caggattatgtcgttgtcgatatcgagacgaccggcggatgggcagggggagatcgcatt
acggagatcggtgcggtcaagattcgcaatcacgcggtcgttgcggaatggcactcgctg
atcaatccgcaacgttcgatcccggcgaagatcacgcagctgaccgggatcaccaacgcg
atggtgcgcgacgcgccgctgttcggcgatgtggcggacagttttatcaatttcatggat
gacgggatcttcgtcgcgcatagcgtcaacttcgactacggtttcatcgcgcatgaatac
gagcgcatcggccggcgcttccgttttccaaaactctgcacctgcgcaagtatgcgccgc
cgctaccccgggcataagtcgtatggacttgccaatctctgcgacgcctacgccatcgat
ctcacggaccatcaccgggctctggccgatgcgcgcgccgccgcccaattgcttaatttg
atcaaccggcaacgcgaggcggcaatcgctcgcgatgatctggcggcgtga
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