Variibacter gotjawalensis: GJW-30_1_03188
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Entry
GJW-30_1_03188 CDS
T05320
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
vgo
Variibacter gotjawalensis
Pathway
vgo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vgo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GJW-30_1_03188 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vgo03400
]
GJW-30_1_03188 (mfd)
Enzymes [BR:
vgo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GJW-30_1_03188 (mfd)
DNA repair and recombination proteins [BR:
vgo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
GJW-30_1_03188 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
MFD_D3
UB2H
Cas3-like_C_2
SecA_DEAD
RecG_dom3_C
AAA_16
Motif
Other DBs
NCBI-ProteinID:
BAT60640
UniProt:
A0A0S3PXZ4
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All DBs
Position
complement(3268268..3271786)
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AA seq
1172 aa
AA seq
DB search
MPKSVSKSPAELLAPGRHLTLSRVTEGAEGLVLADLARAAAARPKAPAITLVTVCRDGPR
MAALTRALGFFAPDIDVIEFPAWDCQPYDRVSPHASISAQRMMTLSRLANVTGRERPSVL
LTTVNAILQRVPPRQAVATQSFSAAPGNMLDMQAIVKWLELNGYTRASTVREPADYAVRG
GIIDLFPPGLDLPIRLDFFGDTLETIRSFDPESQRTVGQLRTLDLVPVAEFQLTTETIRR
FRQRYTEQFGAPTRDDTLYEAISEGRRYPGMEHWLPLFHTSMDTLFDYVPDSPIVLGAMV
EDAARERFATITDYYEARKEIIADAQSGPPYKPLKPDALYLTDTQWKKTLDDSATVSLSA
FATPESANVVDVETRQGHNFAAERAEQGANVFEALAKHVNKLQGGGKRVAVALWSEGSRD
RMSHVLGEHGLNNLAMVPSWPEALKQPKHVVSLGVVGLESGFESDDFAIISEQDILGDRL
VRTKRTSKRAQDFLQEVGALTHGDLVVHVDHGIGRFVGLRAIEVTGAPHDCLEIHYADAA
KLFLPVENIELLSRYGSEETTVQLDRLGGGGWQARKARMKQRIREMAGALIRVAAERQLR
EAPKLTVPAGLYDEFCASFPYEETEDQAGAIDAVLGDLAAGRPMDRLICGDVGFGKTEVA
LRAAFATAMSGKQVAVVVPTTLLARQHFKTFSERFRGFPLRVAQASRLVNSAELKVTKQE
LTEGKVDIIVGTHALLGKTIKFNDLGLIIVDEEQHFGVAHKEKLKQLRAEVHVLTLTATP
IPRTLQLALTGVRELSIIASPPVDRLTVRTFISPFDPLSVREALLRERYRGGQSFYVCPR
IEDLASVKDFLDKNVPEVRVAVAHGQMAPGVLEDIMTAFYDGKYEVLLSTTIVESGLDIP
NANTLIVHRADRLGLAQLYQLRGRVGRSKLRAFSLFTLPAEKKITPQAERRLKVLQSLDT
LGAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGYELYQQMLEEAVMSLKAGISEPISDKW
SPQITIGTPVLLPEEYVADLNVRLTLYRRLSELEDEREIDAFGAELIDRFGPSPEEVRHL
LKIVVIKALCRRANVEKVEAGPKGAVLQFRDNAFANPDGLVAYIREEGPAAKVRPDMKVV
FFENWDQPEKRLAGTLLILRTLVAIAERAKAA
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atgccgaagtcagtttccaagtcacccgccgagctattggcgccgggacgccacctcact
ctctcgcgcgtgaccgagggggctgaagggctcgtcctcgcggatctcgcgcgtgctgcc
gcggcgcgtccgaaagcgcccgcgatcacgctcgttacggtctgtcgcgatggcccccgc
atggcggcgctgacgcgtgcgcttgggttcttcgcgccggatatcgacgtgatcgagttc
ccggcctgggactgtcagccttacgaccgagtctcgccgcatgcgagcatttcggcgcag
cgcatgatgacgctgtcgcggctcgccaacgtgacggggcgtgagcggccgtcggtgctg
ctgaccaccgtcaacgcgatcctgcagcgcgtgccgccgcgccaggcggtggcgacgcaa
tccttttcggccgcgcccggcaatatgctggacatgcaggccatcgtgaaatggctcgaa
ctcaacggctatacgcgcgcctctacggtgcgcgagccggccgactatgcggtgcgcggc
ggcatcatcgatctgttcccgccgggcctcgatctgccgatccggctcgacttcttcggc
gacacgctggagacgatccgtagcttcgatccggaaagccagcggacggtcgggcaactt
cgcacgctcgatctcgtgccggtcgccgagttccaactgacaaccgagacaatccgccgt
ttccgccagcgctacaccgagcagttcggtgcgccgacgcgcgacgacacgctttacgaa
gcgatcagcgaaggccggcgctaccccggcatggagcactggctgccgctgtttcacacg
tcgatggatacgctgttcgattacgtgccggactcgccgatcgtgcttggtgcgatggtc
gaagatgcggcgcgcgagcgtttcgcgacgatcacggactactatgaggcccgcaaagag
atcatcgcggatgcgcagagcgggccgccctataagccgctgaagccggacgcgctgtat
ctgacggacacgcagtggaagaagacgctcgacgatagcgcgacggtatcgctcagcgct
ttcgcgacgccggagagcgccaacgtcgtcgatgtcgagacgcggcaggggcataacttt
gcggcagagcgtgcggagcagggcgccaacgtgttcgaggcgctggccaagcacgtcaac
aagctgcaaggcggcggcaaacgtgtcgccgtcgcgttatggagcgaaggctcacgcgac
cgcatgagccacgtactcggcgagcacggcctgaacaacctcgcgatggtgccgtcctgg
cccgaagcgctgaagcagccgaagcatgtcgtatcgctcggcgtcgtcggcctcgagagc
gggttcgagtccgatgatttcgcgatcatcagtgagcaggacattctcggtgatcgcctg
gttcgcaccaagcgcacatcgaaacgggcgcaggattttctgcaggaagtcggcgcgctg
acgcatggcgatctcgtcgtccacgttgaccacggcattggccgtttcgttggcttacgt
gcgatcgaagtcaccggcgcgccgcatgactgcctggaaattcactacgcggacgcagcc
aaactgttcttgccggtcgagaatatcgagcttctgagccgttacggttctgaagagacg
acagttcagcttgatcgtctgggcggcggcggatggcaggcgcgcaaagcgcgcatgaaa
cagcgcatccgcgaaatggcgggcgcgctcatccgcgttgcggccgagcggcaattgcgc
gaagcgccgaagctgacggtgccggcggggctctacgacgagttctgcgcaagcttcccg
tacgaagagacggaagatcaggccggcgcgatcgatgcggttctcggcgatcttgcggcc
ggacgcccgatggatcgcctgatctgtggcgacgtcggttttggtaagaccgaagtcgcg
ttacgcgccgcattcgcgaccgcgatgagcggcaagcaggtcgcggtcgtggtgccgacg
acgctgctcgcacggcagcacttcaagacattctcggaacggttccgcggcttcccgcta
cgcgtcgcgcaggcctcgcgtctcgtcaacagcgcagagctgaaagtgaccaagcaggag
ctgaccgagggcaaggtcgacatcatcgtcggcacgcatgcgctgctcggcaagacgatt
aagttcaacgatctcggcctcatcatcgtcgacgaggagcagcactttggcgtcgcccat
aaggagaagctgaagcagctccgcgccgaagtgcatgtgctgacgctgacggcgacgcca
atcccgcgcacgctgcagctcgcgctcacgggtgtgcgcgaactctcgatcatcgcatcg
ccgccggtcgatcgcctgacggttcgcacgttcatcagcccgttcgacccgctgtccgtg
cgtgaggcgctgctgcgcgagcgttatcgcggcgggcagtcgttctacgtttgcccacgc
atcgaagacctcgcgagcgtgaaggatttcctcgacaaaaacgtgccggaggtgcgtgtc
gcggtcgcgcacgggcagatggcgccgggcgtgctcgaagacatcatgacggccttctac
gacggcaagtacgaagtgctgctgtcgaccacgatcgtcgagtccggtctcgatattccg
aacgcgaacacgctgatcgtgcatcgtgcggaccggctcgggctcgcgcagctttatcag
ttgcgcggccgcgtcggacgctcgaaactgcgcgcgttctcgctgttcacgttgccggcc
gagaagaagatcacgccgcaggctgagcgccggctcaaggttctgcagtcgctcgatacg
ctcggtgcgggcttccagcttgcgtcgcacgatctcgacattcgcggcgccggcaatctg
ctcggtgaagaacagtctggtcacatcaaggaagtcggctacgaactctatcagcagatg
cttgaagaggccgtgatgagcctaaaggccggcatctccgagccgatcagcgacaagtgg
tcgccgcagatcaccatcggcacgccggtgttgctgccggaagagtatgtcgccgatctc
aacgtgcggctgacactgtatcgccggctttcggaattggaagacgagcgcgagatcgat
gcattcggtgccgagttgatcgaccgcttcgggccatcgccggaggaggtacggcatctg
ctcaagatcgttgtgatcaaggcgctctgccgccgcgccaatgtcgagaaagtcgaggcg
gggccgaagggcgcggtgctgcagttccgcgacaacgcgttcgcgaacccggatggcctc
gtcgcgtatatccgcgaggaaggcccggccgcgaaggtgcggccggacatgaaggtcgtg
ttctttgagaactgggatcagccggagaaacggctcgccggcacgctgcttatcctgcgc
acgttggtggcgatcgcggagcgcgcgaaggcggcttag
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