Variibacter gotjawalensis: GJW-30_1_03298
Help
Entry
GJW-30_1_03298 CDS
T05320
Symbol
dnaE1
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
vgo
Variibacter gotjawalensis
Pathway
vgo03030
DNA replication
vgo03430
Mismatch repair
vgo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vgo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GJW-30_1_03298 (dnaE1)
03430 Mismatch repair
GJW-30_1_03298 (dnaE1)
03440 Homologous recombination
GJW-30_1_03298 (dnaE1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vgo03032
]
GJW-30_1_03298 (dnaE1)
03400 DNA repair and recombination proteins [BR:
vgo03400
]
GJW-30_1_03298 (dnaE1)
Enzymes [BR:
vgo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
GJW-30_1_03298 (dnaE1)
DNA replication proteins [BR:
vgo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
GJW-30_1_03298 (dnaE1)
DNA repair and recombination proteins [BR:
vgo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
GJW-30_1_03298 (dnaE1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
T2SSK
HROB
DUF655
Amidohydro_1
HHH_3
DUF8057
Motif
Other DBs
NCBI-ProteinID:
BAT60748
UniProt:
A0A0S3PXS2
LinkDB
All DBs
Position
complement(3377795..3381232)
Genome browser
AA seq
1145 aa
AA seq
DB search
MKSPGFVHLHVHSSFSLLEGALSIARLAELAKADKQPALALTDTNNMFAALEFSEKMAGS
GIQPIVGCDISVDFGDQEADPRMPGGLNVKHPRIVLLAATEEGYGHLIRLTSRAFLETPS
GQSPHIRADWLAAAASGLIVLSGGATGALDMEFAAGRPERAAARSAMLQSLFGDRYYIEL
QRHGAVGQRAIENALVDLAYEKGVPLVATNEPFFAREDDYEAHDALIAIADGRLVSEADR
RQMTSEHRFKTRAEMQKLFADLPEALASTVEIAQRCSYRPRTRKPILPRFTSDVGTDAEA
AEAAELRRQAVEGLERRIRAHGLSPGVEREVYDKRLDYEVGVITRMKFPGYFLIVADFIK
WAKEHGIPVGPGRGSGAGSLVAYALTITDLDPIHFGLLFERFLNEERVSMPDFDIDFCQW
RRDEVIRYVQDRYGRDQVAQIITFGTLQARGVLRDVGRVLEMPYGQVDKLTKLVPQNPAA
PVTLKKAIDEEPKLQAARDAEPVVARAFNIALRLEGLHRHASTHAAGIVIGDRPLSELVP
MYRDPKSDMPVTQFNMKWVEPAGLVKFDFLGLTTLTILDVAVKLVANRGIKLDLTAIPLD
DAKAYEMMARGETVGVFQVESQGMRRALLDMKPDRLEDIIALVALYRPGPMANIPTYCAR
KHGEEESEYLHPKMEEALKETFGVIIYQEQVMQIAQMLAGYSLGEADLLRRAMGKKIKKE
MEAQRERFVSGSVERGIDAPLADTIFELLARFADYGFNKSHAAAYALVSYQTAYMKANYP
VEFLAACMTLAMDNTDKLAEYRAEVVRLGLKLAPPSINRSGVHFSVEDGAIRYSLAALKG
VGAQAVEQIVAARAKGRFRDLSDFASRISPKAINKRVLESLASAGAFDELEPDRARAHAA
VDAMMAQAQRSYESATSGQNELFGGAAMPEALPIPRVQPWMPSERLRKEYEAIGFFLTGH
PLDDYTGVMKRLKLSNYADFARQVKAGATAGRVAATVVSRQERRTKTGNKMGIIGLSDPT
GHYEAVLFSEGLQQFRELLEPGAAVLLFVAAELQGEDVRVRIQAVEPLDKAAEKTQRGLK
VFLRDQAPIDSVARRLEVRGDGEVSMVLLLDAAEVEIKLPGRFKISPQIAGAIKAVPGVI
QVEAI
NT seq
3438 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaagccccggcttcgtccaccttcacgtccattcctcgttctcgttgctggagggc
gcgctatcgatcgcgcgacttgcggaactggcgaaggcggataagcagcccgcgctggcg
ctgaccgacacgaacaacatgttcgcggcgctcgaattctccgagaagatggccggcagc
ggcatccagccgatcgtcggctgcgacatctcggtcgacttcggcgatcaggaagccgac
ccgcgcatgccgggtggcttgaacgtcaagcacccgcgcatcgtgctgctggccgcgacg
gaagagggctacggccatctcatccgcctgacctcgcgggccttccttgaaacgccatcc
ggtcagtcgccgcatattcgcgccgattggctcgccgcggcggcaagcggtttgatcgtc
ctcagcggcggcgctaccggtgcgctcgatatggaattcgcggccggccggccggaacgc
gccgccgcacgatccgcgatgctgcagtcgttgttcggcgatcgctattacatcgagctg
cagcggcacggcgcggtggggcagcgcgccattgagaatgcgctcgtcgatcttgcctac
gagaaaggtgtgccgctggttgctaccaacgagccgttcttcgcgcgcgaggacgattac
gaggcgcatgacgcgctgattgcgatcgcggacggccgcttggtttccgaagccgaccgc
cgacagatgacgtcggagcatcgcttcaagacgcgcgccgaaatgcaaaagctgttcgcg
gatctgccggaggcgctcgcctcgacggtcgagatcgcgcagcgctgctcgtatcgcccg
cggacccgtaagcccattctcccgcgcttcacgtcggacgtcggcacggatgcggaagcc
gccgaggccgctgagctgcgtcgccaagctgtcgaaggtcttgagcggcggatccgagcg
catggcttgtcgccgggcgtcgagcgcgaagtttacgacaagcgcctcgactatgaagtc
ggcgtcatcacacggatgaagtttcccggctacttcctgatcgtcgcggacttcatcaag
tgggcgaaagagcacggcattccggtcgggccgggccgtggctcaggtgcaggctcgctc
gtagcatacgctctgacgatcacggatcttgatcccattcacttcggcttgctgttcgaa
cgcttcctcaacgaggaacgcgtctcgatgccggacttcgacatcgatttctgtcagtgg
cggcgtgacgaagtcattcgctatgtccaggaccgctacggccgcgaccaggtcgcgcag
atcatcacgttcggaacgctgcaggcgcgcggcgtgctgcgcgacgtcgggcgcgtgctc
gaaatgccgtacggacaggtggacaagcttacgaagcttgtgccgcaaaatcctgctgcg
cccgtgacgctgaagaaagcgatcgacgaagagccgaagctgcaggcggcgcgcgacgcg
gagcccgtggttgcgcgagcgttcaatatcgcgctgcggctcgaaggcttgcatcgtcac
gcatcgacgcacgcggccgggatcgtgatcggcgatcgtcctttgagcgaactcgtgccg
atgtaccgcgatccgaagtcggacatgccggttacgcagttcaacatgaagtgggtcgag
ccggccggtctcgtgaagttcgacttcctcggtctcacgacgctgacgatcctcgatgtc
gccgtgaagttggtcgctaatcgcggcatcaagctcgatcttacggctatcccgctcgac
gacgcgaaggcctacgagatgatggcgcgcggcgagaccgtcggcgtgttccaggttgaa
agtcagggcatgcggcgcgcgctgctcgacatgaaacctgaccgtttggaagacattatt
gcgctggtcgcgctctatcgcccgggcccgatggcgaacattccgacctactgcgcgcgc
aagcacggcgaggaagagtcggagtatctgcatccgaagatggaggaggcgctgaaagaa
actttcggcgtcatcatctatcaggagcaggtgatgcagatcgcgcagatgctcgcgggc
tattcgctcggcgaagccgatctgctgcgccgcgcgatgggcaagaagatcaagaaggag
atggaggcgcagcgcgagcgcttcgtctccggctcggtcgagcgcggcatcgatgcgccg
ctggccgatacgattttcgagctgctcgcgcgcttcgccgactacggcttcaacaaaagc
cacgcggcagcgtatgcgctggtctcgtaccagacggcatatatgaaggcgaactatccg
gtcgaattcctggcggcgtgtatgacgctcgcgatggacaacacggataagctcgcggaa
taccgcgcagaggtcgtgcgcctcggcctcaagctggcgccgccgtcaatcaatcgctcg
ggcgtccatttcagcgtcgaggacggcgcgatccgttattcgctcgcagcgctgaaaggc
gtcggtgcgcaggcggtcgagcagatcgtcgcagcgcgtgcgaaagggcgcttccgcgac
ctctcggatttcgcgtcgcggatatcgccgaaggcgatcaacaaacgcgtgctggaaagt
ctcgcctcagcaggtgcgttcgacgaactcgagccggatcgcgcgcgcgctcacgcggct
gtcgacgccatgatggcgcaagcgcagcgtagctacgagtcggcgacgagcgggcaaaac
gaactgttcggtggcgctgcgatgccggaagctctgccgatcccgcgcgtgcagccatgg
atgccgtcggagcgactgcgcaaggaatacgaggcgatcggcttcttcctcaccggccat
ccgctcgacgactatacgggcgtgatgaagcggctgaagctttccaactacgccgatttc
gcgcgtcaggtgaaggcaggcgcgacggcgggcagggtggcggcgactgtcgtctcgcgg
caggagcggcgaacgaagaccggcaacaagatgggcatcattggtctctcggacccgacc
ggacattacgaggccgtgctgttctccgaaggcctgcagcagttccgcgaattgcttgag
ccgggcgccgctgtgctgttgttcgtcgcggccgaactgcagggcgaagacgtgcgcgtt
cgcattcaagccgtcgagccgctcgacaaagctgccgagaagacgcagcgcggattgaaa
gtcttcctgcgggatcaagcgccgatcgacagcgtcgcgcgccgcctcgaagtgcgcggc
gatggcgaggtttcgatggtgctgcttctcgatgcggccgaggtcgagatcaagctgccg
ggccgcttcaagatatcgccgcagatcgcaggagcgatcaaggccgtgccgggcgtcatt
caggtcgaggcgatttga
DBGET
integrated database retrieval system
