Variibacter gotjawalensis: GJW-30_1_03421
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Entry
GJW-30_1_03421 CDS
T05320
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
vgo
Variibacter gotjawalensis
Pathway
vgo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vgo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GJW-30_1_03421 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vgo03019
]
GJW-30_1_03421 (rne)
03009 Ribosome biogenesis [BR:
vgo03009
]
GJW-30_1_03421 (rne)
Enzymes [BR:
vgo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
GJW-30_1_03421 (rne)
Messenger RNA biogenesis [BR:
vgo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GJW-30_1_03421 (rne)
Ribosome biogenesis [BR:
vgo03009
]
Prokaryotic type
rRNA processing factors
GJW-30_1_03421 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Ogr_Delta
Motif
Other DBs
NCBI-ProteinID:
BAT60871
UniProt:
A0A0S3PY56
LinkDB
All DBs
Position
3498307..3501471
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AA seq
1054 aa
AA seq
DB search
MANKMLIDSTHPEETRVVVVRGNRVEEFDFESASRQQLRGNIYLAKVTRVEPSLQAAFVE
YGGNRHGFLAFSEIHPDYYQIPVADRQALLDEEERAHREEEDEEERRPSRGRGRRHRSSR
SRDDVKRGRPVEGESRDSHDQDNQDHHDHDGEGTHGEHRDDHEHHAETGDAVGIVETDRT
DNMQGLPPGTHETQATVGNPDTTLFDAGAKPADEDPTAPRTLNQLAEQVDEILKPFDRPH
DEAKSDEAPRFASDETQLHGSAEAEAADKHGDEHHDDEKHDDEHHADGEHGGHGDVEDAP
HDDEEEDEGVESVGGADALEEVQERRAPRYRKQYKIQEVIKRRQVLLVQVVKEERGSKGA
ALTTYLSLAGRYSVLMPNTARGGGISRKITSSDDRKRLKEIAGELEVPEGMGVILRTAGA
NRTKPEVKRDFEYLLRMWETVRDVTLKSSAPTLVYEEGSLIKRSIRDLYNKDIDEVTVAG
DTGYREAKDFMRMLMPSHARNVRLYKDPQALFTRHGIESQLDAMFSPVVQLRSGGYIVIN
QTEALVSIDVNSGRSTREHHIEDTALKTNVEAAEEVARQLRLRDLAGLIVIDFIDMDEKR
NNRTVERKMKEALKHDRARIQVGRISHFGLLEMSRQRIRTSVLESSTEKCPHCGGTGHMR
STSSLTLQLLRSLEEQLLKQATHNMLVRTRSEIALYVLNHKRAHLRMLEERYQITITITA
DAAINGQQPFLIERGDVVHTPDAARAIAQRQQELLRNASVAEEDEDDFVEIEIENEDDES
ADENESGEESETSAREDGEGEGEEGNRRPRRRRRRRGRGGRGGDRPENGEDTEQHADGEA
PQQETAGDDAEGEGEDDEQTSEAGGETADGAAQTDEGRRRRRGRRGGRRNRRDREERGDR
DQAPQNADAAVGEAAPDSASWQEWPVQAEATGASSETSSESPAQPAVTASAESEAPIAAL
PITETVTPPPAAEAPKAAEAPATAPAAEEAKPRRRSTVRESAPVSVESGEYTPPPPPRDI
AALPSEPPAPAAIPVEDDRPRRTGWWSRKVLGRE
NT seq
3165 nt
NT seq
+upstream
nt +downstream
nt
atggccaacaagatgcttatcgacagcacccacccggaggagacccgggtcgtggtggtg
cgcggcaaccgggtcgaagaattcgactttgaatctgccagccgccagcaactgcgcggc
aacatctacctcgccaaagtcacccgcgtagagccgtcgctgcaggcggccttcgtcgaa
tacggcggcaaccgccacgggttcttggcattctctgaaatccaccccgactattatcaa
atcccggtcgccgaccggcaggcgctgctcgacgaagaagagcgcgcgcatcgcgaagag
gaagacgaggaagagcgccgcccctcgcgtggccgcggccgccgtcatcgctcctcgcgt
tcccgcgacgacgtcaagcgcggacgcccggtcgagggcgaaagccgagatagccacgac
caagacaatcaggatcaccacgatcacgacggcgaaggcacgcacggcgagcatcgtgac
gaccacgagcatcacgccgagaccggcgacgctgtcggcattgtcgagaccgatcgcacc
gacaacatgcagggcctcccgcccggcacccacgaaactcaggcaaccgtcggcaatccg
gacacgacgttgttcgatgccggtgccaagccggccgacgaagacccgaccgcgccgcgc
acgctgaaccaactcgccgagcaggtcgacgagatcctcaagccgttcgatcgtcctcac
gatgaagccaagtctgacgaagcaccgcgcttcgcctccgacgagacgcagctgcacggc
tcggctgaggccgaagctgcggacaagcacggcgacgagcatcacgacgacgagaagcac
gacgacgagcatcacgctgacggcgagcacggcggtcacggcgatgtcgaagacgcgccg
cacgacgacgaggaagaagacgaaggcgtcgagtccgtcggtggtgccgatgcgctcgaa
gaagtccaggagcgccgcgcgccgcgctaccgcaagcaatataaaatccaagaagtcatc
aagcgccgtcaggtgctgctggtgcaggtcgtcaaggaagagcgcggctccaagggcgct
gctctcacgacgtatctctccctcgccggccgctactcggtgctcatgccgaacaccgcg
cgcggtggcggcatctcgcgcaagatcacctcatcggacgatcgcaagcgcttgaaggaa
attgccggcgagctggaagtgccggaaggaatgggcgttatcctgcgcacggccggtgcg
aaccgcaccaagccggaggtgaagcgcgacttcgaatatctcctgcgcatgtgggagacg
gtgcgcgacgtgacgctgaagtcctcggcgccgacgctcgtttacgaggaaggctcgctg
atcaaacgctccatccgcgatctctataacaaggacatcgacgaagttacggtcgcgggc
gacacgggttatcgcgaagccaaagactttatgcgcatgctgatgccgagccacgcgcgc
aacgtgcggctctacaaggatccgcaggcgctgttcacgcgccacggcatcgaaagtcag
ctcgacgcgatgttctcgcccgtcgtgcagcttcgctccggcggctacatcgtcatcaac
cagaccgaagcgctcgtctccatcgacgtgaactcgggccgttcgacccgcgagcaccac
atcgaggacacggcgctcaagacgaacgtcgaagccgccgaggaagtcgcgcgtcagctc
cgcttgcgcgatctcgccggcctcatcgtcatcgatttcatcgacatggacgagaagcgc
aacaatcgcacggttgagcgcaagatgaaggaagcgctcaagcacgatcgcgcgcgcatc
caagtcggccgcatctcgcatttcggcttgctcgaaatgtcgcgccagcgcatccgcacc
agcgtgctcgaaagctcgaccgagaagtgcccgcattgcggtggcaccggccacatgcgt
tcgacctcgtcgctcacgctgcagcttctccgctcgctcgaagagcagctcctcaagcag
gcgacgcacaacatgctcgtgcgcacccgctccgagatcgcgctctatgtgctcaaccac
aagcgcgcgcatctgcgcatgctcgaggagcgctatcagatcacgatcacgatcacggcc
gacgccgcgatcaacggccagcagccgttcctcatcgaacgcggcgacgtcgtgcatacg
ccggacgccgcgcgagccatcgcgcagcgccagcaggaactgctgcgcaatgcttcggtc
gccgaagaagacgaggacgatttcgtcgagatcgagatcgagaacgaggacgacgagtcc
gcggacgagaacgaaagcggcgaagagtccgaaaccagcgcgcgtgaagatggcgaaggt
gaaggcgaagaaggcaaccgccgcccgcgccgccgtcgccgtcgtcgcggccgtggtggg
cgcggtggcgatcgccccgagaatggcgaggacaccgaacagcatgccgacggcgaagca
ccgcagcaggaaactgccggtgacgatgccgagggtgaaggcgaagacgacgaacagacg
agcgaagccggcggcgagacagccgacggcgccgcgcagactgacgaaggccgccgccgc
cgccgtggccgccgtggtggacgccgcaatcgccgtgaccgcgaggaacgtggcgaccgc
gatcaggctccgcagaatgcggacgctgccgttggcgaagctgctccggacagcgcgtcc
tggcaggaatggcccgttcaggccgaagccaccggcgctagctcggaaacctcgtcagag
tccccagcgcagccagccgtgacggcatcagcggaaagcgaagcaccgatcgcagcgctc
ccgatcaccgagactgtgacgccgccgcctgccgccgaggcgcccaaggctgctgaagct
cccgcgacggctccggccgccgaagaagccaagccgcgccgccgctcgaccgtccgcgaa
agcgcaccggtcagcgtcgagtccggcgaatacaccccgcctccgccgccgcgcgacatc
gcggcgctaccgagcgagccgcccgctcccgcagcgattcctgtcgaggacgaccgtccg
cgccgcaccggctggtggtcgcgcaaggttctcggccgcgagtaa
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