Variibacter gotjawalensis: GJW-30_1_03486
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Entry
GJW-30_1_03486 CDS
T05320
Symbol
rnd_2
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
vgo
Variibacter gotjawalensis
Brite
KEGG Orthology (KO) [BR:
vgo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vgo03016
]
GJW-30_1_03486 (rnd_2)
Enzymes [BR:
vgo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
GJW-30_1_03486 (rnd_2)
Transfer RNA biogenesis [BR:
vgo03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
GJW-30_1_03486 (rnd_2)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
DUF2202
Motif
Other DBs
NCBI-ProteinID:
BAT60936
UniProt:
A0A0S3PYB3
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All DBs
Position
3557232..3558377
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AA seq
381 aa
AA seq
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MEPITSNEFLAEACKRLADHPFITVDTEFLRETTYYPKLCVVQLASADEAVVIDTLAPDI
DLTPFFELMKNEKVLKVFHAARQDIEIVWHRGGFVPKPIFDTQVAAMVLGYGDSISYDQL
VQRITGDALDKSHRFTDWSRRPLTPEQIKYAISDVTHLRDVYQALAADLEKRGRSDWVGE
EMEVLTSPETYRADPEKAWERLKSRVRKPREIAALMELAAWREREAQSRDVPRSRVLKDE
VLADIAVHAPSTPERLMNLRSVPKGFERSKWGQDVIDAIKRGLERDPKTLPRIERTRGTA
QGAATVELLKVLLRMTAEKNGVAAKVIATVDDLERIAEESDADVGALKGWRRELFGEKAL
ALKEGRLALAIEKGRVRAIER
NT seq
1146 nt
NT seq
+upstream
nt +downstream
nt
atggagccaatcacttccaacgaattcctggccgaagcttgtaagcgtctcgccgaccac
ccgttcatcacggtcgacaccgagttcctgcgagagacgacctattatccgaaactctgc
gtcgtgcagctggcgtcggcggacgaggctgtcgtcatcgacacgctcgcgccggacatc
gacctcaccccgttcttcgagttgatgaagaacgagaaggtgctgaaggtcttccacgcc
gcccgccaggacatcgaaatcgtctggcatcgcggcggcttcgtccccaaaccgatcttc
gacacccaggtcgccgccatggtcctcggctacggcgattcgatctcttacgatcagctt
gtgcagcgcatcacgggcgatgcgctcgacaaatcgcatcgcttcaccgactggtcgcgc
cgcccgctgacccctgagcaaatcaaatacgcgatctccgacgtcacgcatctgcgcgat
gtttatcaagcgctcgccgccgacttggaaaagcgcggccgcagcgattgggtcggcgaa
gagatggaggtgctcacctccccggagacttatcgggccgatccggaaaaagcttgggag
cgcttgaagtcgcgcgtgcgcaagccgcgcgagatcgcggcgctgatggaactcgccgct
tggcgcgagcgcgaggctcagtcgcgcgacgtgccgcgcagccgcgtcctcaaggacgaa
gtgctcgccgacattgccgtgcatgcgccgtcgacgccggagcgcctgatgaatctgcgc
tcggtgccgaaaggcttcgagcgttcgaagtggggacaggacgtcatcgacgcgatcaag
cgcgggctcgagcgcgatccgaagacactgccgcgcatcgagcgcacgcgcggcaccgcg
caaggcgccgcgaccgtcgagctactcaaagtcctgctgcgcatgacggcggaaaagaac
ggcgtcgccgcgaaagtcatcgcgaccgtcgacgatctcgaacgcatcgcggaagagagc
gatgcggacgttggcgcgctcaagggctggcgacgcgaactgttcggcgagaaagcgctc
gcgctgaaagaaggccgtctcgcgctggcgatcgagaaaggccgcgtccgcgccatcgag
cgctga
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