Variibacter gotjawalensis: GJW-30_1_03579
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Entry
GJW-30_1_03579 CDS
T05320
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
vgo
Variibacter gotjawalensis
Pathway
vgo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
vgo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GJW-30_1_03579 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vgo03021
]
GJW-30_1_03579 (rpoA)
03400 DNA repair and recombination proteins [BR:
vgo03400
]
GJW-30_1_03579 (rpoA)
Enzymes [BR:
vgo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GJW-30_1_03579 (rpoA)
Transcription machinery [BR:
vgo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GJW-30_1_03579 (rpoA)
DNA repair and recombination proteins [BR:
vgo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GJW-30_1_03579 (rpoA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
RNA_pol_L_2
IDH
HHH_XRCC3_RpoA
Motif
Other DBs
NCBI-ProteinID:
BAT61029
UniProt:
A0A0S3PYL2
LinkDB
All DBs
Position
complement(3649456..3650478)
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AA seq
340 aa
AA seq
DB search
MHVIQKNWQELIKPEKLQVTPGHDAKRVATVVAEPLERGFGLTLGNALRRILLSSLQGAA
VQSVQIDGVLHEFSSIPGVREDVTDIVLNIKDIAIRMQGDGPKRMVVKKQGPGPVTAGDI
STVGDVSVLNPDLVICTLDDGAEIRMEFTVNTGKGYVSSERNRPEDAPIGLIPVDSLYSP
VRKVSYRVENTREGQILDYDKLTMTIETNGSITPDDSLAYAARILQDQLNVFVNFEEPKR
EQAAETIPDLAFNPAFLKKVDELELSVRSANCLKNDNIVYIGDLVQKSEAEMLRTPNFGR
KSLNEIKEVLAQMGLHLGMEVPGWPPENIDDLAKRFEDHY
NT seq
1023 nt
NT seq
+upstream
nt +downstream
nt
atgcacgtgattcaaaagaactggcaagaattgatcaagcccgagaagctccaagtgact
ccgggtcacgacgctaagcgcgtcgcgacggttgtcgctgagccgctcgagcgcggcttt
ggtttgacgctcggcaacgcactgcgccgcattctgctttcgtcgctgcaaggcgcggcg
gtgcagtcggtgcagatcgacggcgtgttgcacgagttctcgtcgatcccgggcgtgcgc
gaggacgtgaccgacatcgttctcaacatcaaggatatcgcgatccgcatgcagggcgat
ggcccgaagcgcatggtcgtgaagaagcagggcccgggcccggtcaccgccggcgacatc
tcgacggtcggcgacgtttcggttctcaatccggacctcgtgatctgcacgctcgacgac
ggtgcagagatccgcatggaattcaccgtcaacaccggcaagggttacgtctcgtccgag
cgcaaccgtccggaagatgcgccgatcggcctcatcccggtcgacagcctgtattcgccg
gtgcgcaaggtttcgtaccgcgtcgagaatacgcgcgagggtcagatcctcgactacgac
aagctcacgatgacgatcgagacgaacggctcgatcacgccggatgactcgctcgcttac
gctgcgcgcattctgcaggatcagctcaacgtgttcgtcaacttcgaagagccgaagcgc
gagcaggccgctgagacgattccggatctcgcgttcaacccggccttcctcaagaaggtt
gacgagctcgaactgtcggtgcgttcggcgaactgcttgaagaacgacaacatcgtttac
atcggcgacctggttcagaagtcggaagcagagatgctccgcacgccgaacttcggccgc
aagtcgctcaacgagatcaaggaagtgctggcgcagatgggcctgcatctcggcatggaa
gtgccgggttggccgccggaaaacatcgacgatctcgccaagcgtttcgaagaccactac
tga
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