Variibacter gotjawalensis: GJW-30_1_03614
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Entry
GJW-30_1_03614 CDS
T05320
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
vgo
Variibacter gotjawalensis
Pathway
vgo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
vgo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GJW-30_1_03614 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vgo03021
]
GJW-30_1_03614 (rpoC)
03400 DNA repair and recombination proteins [BR:
vgo03400
]
GJW-30_1_03614 (rpoC)
Enzymes [BR:
vgo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GJW-30_1_03614 (rpoC)
Transcription machinery [BR:
vgo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GJW-30_1_03614 (rpoC)
DNA repair and recombination proteins [BR:
vgo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GJW-30_1_03614 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
BAT61064
UniProt:
A0A0S3PYP0
LinkDB
All DBs
Position
complement(3673893..3678080)
Genome browser
AA seq
1395 aa
AA seq
DB search
MNQELMNLFSPQAPAQVFDQIRISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGIICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRIGMLMDITLKELERILYFESYVVIEPGLTPLKDRQLLSEDDYVRAQDEYGQDSFTA
MIGAEAIREMLKAMDLPKIAVDLRAEIGETDSEIKKKKNAKRLKLIEAFVASGNKPEWMI
LTQVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIIRNEKRM
LQEAVDALFDNGRRGRVITGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVIVVG
PELKLHQCGLPKKMALELFKPFIYSRLEAKGLSTTVKQAKKLVEKERPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGQPIIVPSQDIVLGLYYLSLMKEGEPGEGKVFAEMAEIDHALH
EKAITLHTKIKYRWDGLGFDGRPIRRWYETTPGRVKIGEVLPNSPKIPFDVANKLMTKRE
ISGTIDTVYRHCGQKDTVIFCDRIMALGFHNAFKAGISFGKDDMVVPASKKKLVEETRVL
VKDYEQQQNDGLITPGEKYNKVVDAWSKCTDKIAEEMMREISAVRKDETGKRERPINSIY
MMAHSGARGSPTQMKQLAGMRGAMTKPSGEIIETPIISNFKEGLSVLEYFNSTHGARKGL
ADTALKTANSGYLTRRLVDVAQDCIITTVDCGTDAGIKVRAIIDAGTVVASLATRILGRT
TAEDVRDPATHEVIVPNGTALDESHVDLITKASVQEVRIRSVLTCSVTSGVCGKCYGRDL
ARGTPVNMGEAVGVIAAQSIGEPGTQLTMRTFHIGGVAQISEQSFIESNFDGVITIRNRG
VVRNADGENIAIVRNMAVVVSDPDGTERAVHRIQYGSRLKVDEGDKVKRGQRIADWDPFT
RPIISEVDGIVGFEDLVEGQSMSEAIDEATFIAKRIVTDWRSTRGGADLRPAIAIKGKDG
KVKKLSRGADARYQLAVDAIISVDPDAQVRAGDVIARISTEGAKTRDITGGLPRVAELFE
ARRPKEAAVIAEISGTIRFGRDYKNKRRLSIEPTDGSEPREYLIPKGKHIHLQDGDAIEK
GDFILEGNPAPHDILAVKGVEELAAYLVNEIQEVYRLQGVMINDKHIEVIVRQMLQKVEI
EDGGETDLIEGEQIDKIEFDEINVKAKEEGKKEATAHPVLLGITKASLQTRSFISAASFQ
ETTRVLTEAAVSGKHDTLDGLKENVIVGRLIPAGTGAQMTRLREVATKRDDLILDEREKT
SGAEQPEALPAPAAE
NT seq
4188 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaagaactgatgaacctctttagcccgcaggcgccggctcaggttttcgaccag
attcgcatttcgatcgcgagcccggagaaaatcctgtcgtggtcctacggcgaaatcaaa
aagcccgaaacgatcaactaccgcacgttcaagccggagcgtgacggcttgttctgcgcg
cgcatcttcgggccgatcaaggactacgaatgcttgtgcggcaagtacaagcgcatgaag
tacaagggcatcatctgcgagaagtgcggtgtcgaagtgacgctgtcgcgcgttcggcgc
gagcgcatgggccacatcgaactcgcagcgcccgtcgcgcatatctggttcctgaagtcg
ctgccgagccgcatcggcatgctgatggacatcacgctcaaggaacttgagcgtattctg
tatttcgagagctacgtcgtcatcgagccgggtctgacgccgctgaaggatcgtcaactc
ctctcggaggacgattatgtccgcgctcaggacgagtacggccaggactcgttcaccgcg
atgatcggcgccgaagccatccgcgagatgctgaaagcgatggatctgccgaagatcgcg
gtcgatctgcgcgccgagatcggtgagacggattcggaaatcaagaagaagaagaacgcg
aagcgtctgaagctcatcgaagcgttcgtcgcttcgggcaacaagccggagtggatgatc
ctgacgcaagtcccggtgatcccgccggatctgcgtccgctcgtgccgctcgacggcggc
cgctttgcgacgtccgacttgaacgacctctatcgccgcgtcatcaatcgtaacaaccga
ctgaagcgcctgatcgagctgcgtgcgccggacatcatcatccgcaacgaaaagcgcatg
ctgcaggaagccgtcgacgctctgttcgacaacggccgccgcggccgcgtcatcacgggc
gccaacaagcgtccgctgaagtcgctcgccgacatgctgaagggcaagcagggccgcttc
cgtcagaacctgctcggcaagcgcgtcgactattcgggccgttcggtcatcgtcgtcggt
ccggagctcaagcttcatcagtgcggcttgccgaagaagatggcgctcgagctgttcaag
ccgttcatctattcgcgcctcgaagccaagggtctctcgaccaccgtcaagcaggccaag
aagctggtggagaaggagcgtccggaggtttgggatatcctcgacgaggttatccgcgag
catccggtgctgctcaaccgtgcgccgacgcttcaccgcctcggcattcaggcgttcgag
ccgacactgatcgaaggcaaggcgatccagctgcatccgctggtttgcgcggcgttcaac
gccgacttcgacggcgaccaaatggccgtgcacgttccgctgtcgctcgaagcgcagctg
gaagcgcgcgtgctcatgatgtcgacaaacaacattctgcatccggcgaacggccagccg
atcatcgtgccgtcgcaggatatcgttctcggtctctactatctttcgttgatgaaggaa
ggcgagccgggcgagggcaaggtgttcgccgaaatggcggagatcgatcacgcgttgcac
gagaaggcgatcacgctgcacacgaagatcaagtaccgttgggacggtctcggcttcgat
ggcaggccgatccgccgctggtacgaaacgacgccgggccgcgtgaagatcggcgaagtt
ctgccgaacagcccgaagattcctttcgacgtcgccaacaagctgatgacgaagcgcgag
atctcgggaacgatcgacaccgtctatcgtcactgcggtcagaaggacacggtcatcttc
tgcgatcgcatcatggcgctcggcttccacaacgcgttcaaggccggcatctcgttcggc
aaggacgacatggtggtgccggcttcgaagaagaagctggtcgaagagacgcgcgtgctc
gtgaaggactacgagcagcagcagaacgacggcctcatcaccccgggcgagaagtacaac
aaggttgtcgatgcctggtcgaagtgcaccgacaagatcgccgaagaaatgatgcgcgag
atctcggccgtccgtaaggacgagacgggcaagcgcgagcggccgatcaactcgatctac
atgatggcccactcgggagcgcgcggttcgccgacgcagatgaagcagctcgccggtatg
cgcggcgcgatgacgaagccttcaggcgaaatcatcgagacgccgatcatctcgaacttc
aaagagggtctgtcggttctcgagtacttcaactcgacgcacggtgcgcgtaagggtctt
gccgatacggcgctcaagacggcgaactcgggttacctgacccgccgtcttgtcgacgtg
gcgcaggactgcatcatcacgacggtcgattgcggcaccgacgcgggcatcaaggtgcgc
gcgatcatcgacgccggcacggtcgtcgcctcgctggcaacgcgcatcctcggccggaca
acggcagaggacgtgcgtgatccggcgacgcacgaagtgatcgtgccgaacggcacggcg
ctcgacgaaagccatgtcgacctcatcaccaaggcgagcgtgcaggaagtgcgcattcgc
tcggtgctgacctgctcggtcaccagcggcgtttgcggcaagtgctacggccgcgatctt
gctcgcggcacgccggtcaacatgggcgaagcggtcggcgtcatcgcggcgcagtcgatc
ggcgagccgggcacgcagctcacgatgcgtacgttccacatcggcggcgttgctcagatt
tccgagcagtcgttcatcgaatcgaacttcgacggtgtcatcacgatccgtaaccgcggc
gtcgtccgcaacgcggacggtgaaaacattgcgatcgtccgcaacatggcggtcgtagtg
tccgatccggacggtacggagcgcgcagtgcaccgtatccagtacggctcgcgcctaaag
gtcgacgaaggtgacaaggtcaagcgcggccagcgcatcgccgattgggacccgttcaca
cgcccgatcatcagcgaagtcgacggcatcgtcgggttcgaagacctggtcgaaggccag
tcgatgtcggaagcgatcgacgaagcgaccttcatcgccaagcgtatcgtgacggactgg
cgctcgacgcgcggtggcgcggacttgcgtccggccattgcgatcaagggcaaggacggc
aaggtcaagaagctgtcgcgtggtgctgatgctcgttatcagctcgccgtggacgcgatc
atctcggtcgatccggacgcgcaggtgcgggcgggcgatgtcatcgcgcgtatctccacg
gaaggcgccaagacacgcgacatcacgggcggtctgccgcgcgtggcggagctgttcgaa
gcacgccgtccgaaggaagccgccgtcatcgcggaaatctccggcacgatccgcttcggc
cgcgactacaagaacaagcgtcgtctctcgatcgagccgacggacggcagcgagccgcgc
gagtatctcatcccgaagggcaagcacatccacttgcaggacggcgatgcgatcgaaaag
ggcgacttcatcctcgaaggcaatccggcaccgcacgacattcttgcggtcaagggcgtc
gaggagctggcggcctatctcgtcaacgaaatccaggaggtctatcgactccagggcgtc
atgatcaacgacaagcacatcgaggtgatcgttcgccagatgctgcagaaggtcgagatc
gaagacggcggcgagaccgatctcatcgagggcgaacagatcgacaagatcgagttcgac
gagatcaacgtcaaggcgaaggaagagggtaagaaggaagcgacggcgcatccggttctc
ctcggcatcaccaaggcgagcttgcagacgcggtcgttcatttcggcagcgtcgttccag
gagaccacccgcgtcctcaccgaggcggcggtcagcggaaagcacgacacgctcgacggt
ctcaaggagaacgtcattgtgggccgcctgatcccggccggcacgggcgcgcagatgacg
cgtctgcgcgaagtggcgacgaagcgcgacgacctcattctcgacgagcgcgagaagact
tcgggcgccgagcagcccgaagctctcccggcacccgctgccgagtaa
DBGET
integrated database retrieval system
