Variibacter gotjawalensis: GJW-30_1_03740
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Entry
GJW-30_1_03740 CDS
T05320
Symbol
ykoV_3
Name
(GenBank) putative DNA repair protein YkoV
KO
K10979
DNA end-binding protein Ku
Organism
vgo
Variibacter gotjawalensis
Pathway
vgo03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
vgo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
GJW-30_1_03740 (ykoV_3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vgo03400
]
GJW-30_1_03740 (ykoV_3)
DNA repair and recombination proteins [BR:
vgo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
GJW-30_1_03740 (ykoV_3)
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Paralog
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GFIT
Motif
Pfam:
Ku
Motif
Other DBs
NCBI-ProteinID:
BAT61183
UniProt:
A0A0S3PZ18
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All DBs
Position
complement(3793163..3793975)
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AA seq
270 aa
AA seq
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MPRAYWKGYLKLSLVNCPVELFPAITGGGKTRFHQINAKTGHRLRQQMVDEKSGRVVDKD
DKGRGYELSKGKYVAITADELDAIEFENTHVIDIESFVPVDEIDKRYFDRGYYIAPRGKV
GADAFAVIRDAMKDKDRFALARIVIANREHTIALEPLDKGIIGTVLRYDHEVRDAKSYFS
GIKAVRPARDMVKLAEHILESMKGKFAPEKFKDRYELALRKLVKKKSAGRKIEAPKPKPK
DDNVIDLREALKRSLDGSGGAKKKRRKKAA
NT seq
813 nt
NT seq
+upstream
nt +downstream
nt
atgccgcgcgcctactggaagggctatctgaagctttcgctcgtcaattgtccggtcgag
ctgttcccggcgatcaccggcgggggcaaaacgcgatttcaccagatcaacgcgaagacc
ggtcatcgcctgcgtcagcaaatggtcgacgagaaatccggacgtgttgtcgacaaggat
gacaaggggcgaggctacgaactcagcaagggaaagtacgtcgcgatcacggcagacgaa
ctcgatgcgatcgagttcgagaatacgcacgtgatcgacatcgagagtttcgtgccggtc
gacgaaatcgacaaacgctatttcgatcgcggctactacatcgcgccgcgcggtaaggtc
ggcgcggatgctttcgcggttatccgcgatgcgatgaaagacaaagatcgtttcgcgttg
gcgcggatcgtgatcgccaatcgcgaacatacgatcgcgctcgagccgctcgataaaggc
atcatcggcaccgtgctgcgttacgatcacgaagtgcgtgatgcaaagtcctacttctcc
ggcatcaaagcggtgcggccggcgcgcgacatggtgaaactcgccgagcacattcttgaa
agcatgaagggcaagttcgcgccggagaaattcaaggatcgctacgagttggctttgcgg
aagctggtcaagaaaaagtcggcgggccgcaagatcgaggcgccgaagccgaagccgaaa
gacgacaacgttatcgatctgcgcgaggcgctgaaacgtagtctcgatggatcgggcgga
gcgaagaagaagcggcggaagaaggcggcctaa
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