Vallitalea guaymasensis: HYG85_04210
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Entry
HYG85_04210 CDS
T07172
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
vgu
Vallitalea guaymasensis
Brite
KEGG Orthology (KO) [BR:
vgu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
vgu03009
]
HYG85_04210 (rlmD)
Enzymes [BR:
vgu01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
HYG85_04210 (rlmD)
Ribosome biogenesis [BR:
vgu03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
HYG85_04210 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
MTS
Cons_hypoth95
Methyltransf_15
Methyltransf_11
N6_N4_Mtase
PrmA
PCMT
UPF0020
Methyltransf_12
Methyltrans_SAM
DOT1
RrnaAD
FtsJ
Ubie_methyltran
NodS
Methyltransf_4
Motif
Other DBs
NCBI-ProteinID:
QUH28158
UniProt:
A0A8J8M8C5
LinkDB
All DBs
Position
complement(943343..944692)
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AA seq
449 aa
AA seq
DB search
MKKKDIIEGIVEKVEFPNKGIINIDSEKVIVKNVIPGQKIKAVVTKKRKNKIVARALDIL
EKSPMEGEAPCKVFGKCGGCLYQSLPYEEQLKLKESQVLELLDTLGTHYEYEGITKSPME
FNYRNKMEYSFGDEYKDGPLALGMHRKASLYDIVTVDDCKIVSDDFNVILKTTLDYFSER
DIPYYYKRTHEGYLRYLVVRKAVNTQEILVNLVTSSQMDFDLSEWVGELNNCNLDGKIVS
IMHTINDNLADAVKVDEIRKLYGRDYFVEKLLGLEFRISSFSFFQTNSLGAEKLYSVVRD
YVGETRDKVIFDLYSGTGTITQMLAPVAKKAVGVEIVEEAVEAAKENAKLNGLGNCKFIA
GDVLKVIDELTDKPDIIVLDPPRDGIHPKALDKIIDYGVEQIVYVSCKPTSLVRDLEVFL
SRGYKVERVRCVDMFPHTVHVETVCKLYR
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atgaagaagaaagatattattgaaggtattgttgagaaagttgaatttcctaataaggga
attataaatatagattcagagaaagttattgtcaagaatgtaataccaggacagaaaata
aaagctgtagtaactaagaaaagaaaaaataaaatagttgctagagcattagatatatta
gaaaaatcacctatggaaggtgaagctccatgtaaggtatttggcaaatgcggaggctgt
ttatatcagtctttaccatatgaagagcaattgaagttgaaggaatcacaggttctagag
ttattagatacattaggtacccattatgaatatgaaggtataactaagagtcctatggag
tttaattaccgtaataagatggagtatagctttggtgatgagtataaggatggacctctt
gcattaggtatgcatagaaaagcgtcattgtatgatattgttacagttgatgattgtaag
atagttagtgatgattttaatgtgatacttaagactactcttgattatttttctgagaga
gatataccttattattataagagaacacatgaaggttatcttagatatttggtagttagg
aaagctgttaatacacaagagattcttgttaatctggttacttcttctcagatggatttt
gaccttagtgaatgggttggtgagttgaataattgtaatctggatgggaaaatagtatct
ataatgcatactataaatgataatctagcagatgcagttaaggtggacgagatcagaaag
ctgtatggcagggattattttgttgagaaactccttggattagaatttcgtatttcatct
ttttcattttttcagactaattctctaggtgcagagaaactgtattctgtagtaagggat
tatgttggtgagactagggataaggttatatttgacctctatagtggcacggggactatt
actcagatgttagcgcctgttgcaaagaaggctgtaggggttgagattgttgaggaagct
gttgaggcggctaaggagaatgctaagttgaatgggcttggtaattgtaagttcatagct
ggggatgtgttgaaggttattgatgagcttacggataaaccggatattattgtattagat
ccaccaagagatggtattcatcctaaggctcttgataagattattgattatggcgtggag
cagattgtttatgttagttgtaaaccaacttctttggttagggatttggaagtgtttttg
agtagaggttataaggttgagagagttaggtgtgtggatatgtttccgcatactgttcat
gtggagactgtttgtaaattgtaccgataa
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