Vallitalea guaymasensis: HYG85_07480
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Entry
HYG85_07480 CDS
T07172
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
vgu
Vallitalea guaymasensis
Brite
KEGG Orthology (KO) [BR:
vgu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vgu03016
]
HYG85_07480
Enzymes [BR:
vgu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
HYG85_07480
Transfer RNA biogenesis [BR:
vgu03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
HYG85_07480
Prokaryotic type
tRNA splicing ligases
HYG85_07480
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
RasGEF_N
CCD_aECM
Motif
Other DBs
NCBI-ProteinID:
QUH31959
UniProt:
A0A8J8SEQ6
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All DBs
Position
1671313..1672548
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AA seq
411 aa
AA seq
DB search
MFVIYEKEKNRIPIKIWVEDRSKIEDECLAQATNLSNLPFLHKWVCLMPDTHTGKGMPIG
GVIAADNVIIPNAVGVDIGCGMAFIQTNIPVRLLKDTKTPNGTLLQGIIGDILRNIPVGF
SHHNSRQECKTLDDAIKNLDIYQDAKELIPEIEAGYYQIGTLGGGNHFIELQEDEQGLVC
IMLHSGSRHFGYKICNYYHKLARELNTRWFSSVPDEYRLAFLPVNTKEGQDYINWMNLAL
GFASENRSQMLDNVINIVNKWVKKHCDFNTDYTDLINCHHNYAAIEHHYGRNVWVHRKGA
IRAREDELGIIPGAMGSYSYIVKGKGNPESFHSCSHGAGRLMSRKKAMETFGVDEVINDL
KASEVIIGKRSKKDIPEESKFAYKDIDTVINNELDLIEPIKKLKTIGVVKG
NT seq
1236 nt
NT seq
+upstream
nt +downstream
nt
atgtttgtaatttatgagaaagaaaaaaatagaatacctataaaaatatgggttgaagat
agaagcaaaattgaagatgaatgtttggcacaagctacgaatttatctaatctgcctttt
ttacataaatgggtttgcctaatgcctgatacgcatactggaaaaggaatgcccataggt
ggagtaatagccgctgataatgtgataatacctaatgctgtgggagttgatattggttgc
ggtatggcttttatacaaactaatatccctgtaagattattaaaagataccaaaacacct
aatggtacattacttcaaggtatcatcggtgatattcttagaaatatacctgttggtttt
tcccatcataacagtagacaagaatgtaagacattagatgatgctattaagaaccttgat
atatatcaagatgcaaaagagctgattccagagattgaagctggatattatcaaataggt
actcttggtggtggtaatcattttattgaactacaagaggatgaacaaggattggtatgt
ataatgcttcattctggcagtcgtcattttggttataagatatgtaattattaccataag
ttagcaagagaattgaacactagatggttctcttctgtacctgatgaatatagattagca
tttctgcctgtaaataccaaagaaggtcaagattatatcaattggatgaatctagcttta
ggttttgctagtgaaaacagaagtcagatgcttgataatgtcattaatatagtaaacaaa
tgggttaagaaacattgtgatttcaatactgattatactgatttgattaactgtcatcat
aactatgctgccattgaacatcattatggtaggaatgtatgggtacatagaaaaggtgcc
atacgtgcaagagaagatgaacttggcattattccaggtgcaatgggctcatatagttat
attgtaaaaggcaaaggtaatcctgaaagctttcattcttgttctcatggtgctggacga
ttgatgtccagaaagaaagcaatggaaacttttggcgttgacgaagtaatcaacgacttg
aaagcaagcgaagtaataattggtaaaagatccaagaaagatatacctgaagaatcaaag
ttcgcttataaagatatagatactgtaattaataatgaacttgatttgatagaaccaatt
aaaaagcttaaaactattggtgtagtaaaaggttaa
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