Vallitalea guaymasensis: HYG85_18320
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Entry
HYG85_18320 CDS
T07172
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
vgu
Vallitalea guaymasensis
Pathway
vgu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vgu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HYG85_18320 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vgu03019
]
HYG85_18320 (rnr)
03016 Transfer RNA biogenesis [BR:
vgu03016
]
HYG85_18320 (rnr)
Enzymes [BR:
vgu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
HYG85_18320 (rnr)
Messenger RNA biogenesis [BR:
vgu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HYG85_18320 (rnr)
Transfer RNA biogenesis [BR:
vgu03016
]
Prokaryotic type
tRNA degradation factors
HYG85_18320 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
S1CSD-TOTE-2
OB_RNR_1st
OB_HELZ2
CSD
Peptidase_M18
S1_RRP5
CdaS_N
Motif
Other DBs
NCBI-ProteinID:
QUH30769
UniProt:
A0A8J8MDD0
LinkDB
All DBs
Position
4302605..4304758
Genome browser
AA seq
717 aa
AA seq
DB search
MENTLEEKKQVLLEIINHKDYKPMKIKELGILLSINGDDEKRAMLEETLEQLIAEGKIIK
TKRGKYARPEAVNMIVGKFIAHAKGFGFVEIEGEENDIFIPAPYVNGAFNNDTVAIKLIR
RDSKGKRKEGEVIKIIKRNDSDVIGTYQKSKNFGFVVADNKKFTKDIFISKNKSKGAVSG
HKVVVKITDWGNERRNPEGEIIEIIGHINDPGTDILSIVRSYELPMQFPDAVMNQLDYIP
SEVTEEDKAGRLDLREIQMVTIDGEDAKDLDDAITIQRNEDGTFTLGVHIADVTNYVTEG
SPLDVEALRRGTSVYLVDRVIPMLPHKLSNGICSLNMGTDRLALSCLMDIDKKGNVVNHK
IAETLINVDRRMTYTNVRKILSDKDQEVISEYKDFVKMFEEMEELAAILRDKRKRRGSID
FDFAETKVILNEKGEPIDIIPYDRNVATKIIEEFMLLANETIAEDFFWQELPFVYRTHEE
PDPERLATLASFIHNFGYNIKGEGEIHPKEIQKLLIEIEGKPEEAIISRLALRSMKRACY
TVTGDGHYGLATKYYTHFTSPIRRYPDLQIHRIIKENLNGKMEEKRIRHFNAILPNVAKQ
TSETERTAEEAERETIKLKKVQYMEKHIGEKFEGVISGVTAWGLYVELPNTVEGLVHVTT
LDDDYYIFDEKKHIFIGERTSKIYRMGEPVKIAVLSVNKVERTIDFELVSEDTEEEE
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atggaaaatacattagaagaaaaaaaacaggtattgttggagataattaatcacaaagat
tataaaccaatgaagatcaaagagctaggaatactattaagtattaatggtgatgatgaa
aaaagagctatgctagaagaaacattagaacaattgatagctgaaggaaagatcattaaa
acaaaaagaggaaaatatgcaagaccagaagctgtaaatatgattgttggaaagttcata
gctcatgctaaaggttttggatttgttgaaattgagggtgaagagaatgatatctttata
cctgccccatatgttaatggtgcttttaacaatgatacagtagccataaagcttattaga
agagattctaaggggaaacgtaaagagggagaagtaataaagataatcaaacgtaatgac
agcgatgttataggaacataccaaaaaagcaaaaattttggatttgttgttgcggataac
aaaaagtttaccaaggatatttttatttccaagaacaagagtaaaggagcagtatcaggt
cataaagtagttgtaaaaatcactgattggggtaatgaaagaagaaatccagaaggtgag
attattgagattataggacatatcaatgatcctgggacagatatattatcaattgtaagg
agttatgaattgccaatgcaattccctgatgcagttatgaaccaacttgattatattcca
tctgaagtaacagaagaagataaagcaggtaggttagaccttagagaaattcaaatggta
acaatagatggagaagatgctaaagatctggatgatgcaataaccattcaaagaaatgaa
gacggtacatttactctaggtgtccacatagctgatgtaactaactatgttacagaaggg
tcaccccttgatgttgaggcgttaagaagaggtactagtgtttatttagttgatagggtt
atacctatgttgccacacaaattatcaaatggtatttgttctcttaacatgggaacagac
cgtctagcactatcatgtcttatggacattgataaaaaaggtaatgtagttaatcataaa
attgctgaaacccttataaatgtagatagaagaatgacttataccaatgtcaggaaaatc
ctatctgacaaggatcaggaagttataagtgaatataaagattttgtaaaaatgtttgaa
gagatggaagaattagcggctattcttagagataagagaaaaagaagaggttctattgat
tttgattttgcagaaacaaaagttatccttaatgagaagggtgagccaatagacatcatt
ccttatgatagaaatgtagctacaaaaattattgaagagttcatgttattagctaatgaa
actatagcagaagattttttctggcaggagcttccttttgtatatagaacacatgaagaa
ccagacccagaaagacttgctactcttgcctcttttattcacaattttggttacaatata
aaaggcgaaggagaaatacatcctaaggaaattcaaaaactattaattgaaattgaagga
aaaccagaagaagctattatcagcagattagctcttcgttcaatgaaaagagcttgttat
acagtaacaggtgatggacattatggacttgcaaccaaatactacactcattttacttca
cctattagaagatatccagacttacagattcacagaatcattaaagaaaatctaaatggt
aaaatggaagaaaaaagaatcaggcattttaatgctatattgcctaatgttgcaaaacaa
acatctgaaacagaaagaactgctgaagaggcagaaagagaaactattaaacttaaaaaa
gttcaatatatggaaaaacacataggtgaaaaattcgaaggggttatctctggtgtaaca
gcttggggcttatatgtagaattacctaacactgttgaaggacttgttcatgtcacaact
ctagatgatgattattatatttttgatgaaaagaaacatattttcataggtgaaagaaca
agtaagatatatagaatgggtgaacctgtcaagatagcagttctaagtgtaaacaaagtg
gagaggactattgattttgaattagttagcgaagatacagaggaagaagaatag
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