Vibrio campbellii ATCC BAA-1116: VIBHAR_00338
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Entry
VIBHAR_00338 CDS
T00589
Name
(GenBank) hypothetical protein
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
vha
Vibrio campbellii ATCC BAA-1116
Pathway
vha03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vha00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VIBHAR_00338
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vha03019
]
VIBHAR_00338
Enzymes [BR:
vha01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VIBHAR_00338
Messenger RNA biogenesis [BR:
vha03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VIBHAR_00338
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
ABU69360
UniProt:
A7MXT4
LinkDB
All DBs
Position
I:323285..324598
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AA seq
437 aa
AA seq
DB search
MKKTHITEQKFADLGLKPQVTEGLEKKGFEYCTPIQALALPVLLTGQDIAGQAQTGTGKT
LAFLTATFNHLLTTPEHEGRKPTQPRAIIMAPTRELAIQIFNDAAPLIASTGLKAALAYG
GESYDKQLAKLQDGVDILIGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFDLGFIKDIR
FLFRRMPEPKERLNMLFSATLSYRVQELAFEHMHNPEHVVVEPEQKTGHRIQEELFYPSN
EDKMALLQTLIEEEWPDRAIVFANTKHKCESIWGHLAADGHRVGLLTGDVPQKKREKILE
QFTRGEVDLLVATDVAARGLHIPQVTHVFNFDLPDDCEDYVHRIGRTGRAGASGHSISFA
CEDYAINLPPIEEYIEHAIPVSDYDASALIQDLPAPLRMRAPRTQQRRTNTGGTRSGNRK
PQGRRPRQPRQSAPKQS
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaagacgcatatcacagagcaaaagttcgccgatttgggtttaaagccccaagtt
actgaaggattggagaaaaaagggttcgaatattgtacccctatccaagccttggcgttg
ccggtactgctcaccggccaagacattgcaggccaggcccaaacgggtactggtaaaacc
ctcgcgtttcttactgctaccttcaaccaccttctgaccacgccagagcacgaaggtcgt
aagccaactcaaccgcgcgcaatcattatggcgccaacgcgtgagctagcgattcagatc
tttaacgatgctgcgcctttgattgcgagcacaggtcttaaagcggctttagcttacggt
ggcgaaagctacgataagcaacttgccaagcttcaagatggtgtagacattcttattggc
actactggccgtatcatcgatttctacaagcagcgcgtattcaacctaaacaacattcaa
gcggttgttctagatgaagccgaccgtatgttcgatcttggctttattaaagacattcgt
ttcttgttccgtcgtatgcctgagccaaaagagcgtttgaacatgctgttctcagcgacg
ctgtcataccgcgtacaagaattagctttcgaacacatgcacaatcctgagcatgttgtg
gttgaaccagagcaaaaaactggtcatcgcatccaagaagagcttttctacccttcgaat
gaagacaagatggcactgcttcaaactcttattgaagaggaatggccagaccgcgcgatc
gtttttgctaacactaagcataagtgtgagtcgatttggggtcacctagcagccgatggt
caccgtgttggtctactgactggcgatgtaccacagaagaaacgtgaaaagattctggag
caattcactcgtggtgaagttgacctactagtcgcaactgacgttgcagcacgtggtctt
catattcctcaagtaacacacgtattcaacttcgacctaccagatgattgtgaagattac
gttcaccgtatcggtcgtactggtcgtgctggcgcaagcggtcactcgattagctttgct
tgtgaagattacgcaatcaacctgccaccaatcgaagaatacatcgagcacgcaatccca
gtttctgattacgacgcttcggctctaatccaagatctgcctgcaccacttcgtatgcgc
gcgcctcgtactcagcaacgtcgcactaatacaggtggcactcgctctggtaaccgcaag
ccgcaaggacgtcgtcctcgtcagccgcgtcaatcagcgccaaaacaatcataa
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