Vibrio campbellii ATCC BAA-1116: VIBHAR_00344
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Entry
VIBHAR_00344 CDS
T00589
Name
(GenBank) hypothetical protein
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
vha
Vibrio campbellii ATCC BAA-1116
Pathway
vha03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vha00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VIBHAR_00344
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vha03019
]
VIBHAR_00344
03400 DNA repair and recombination proteins [BR:
vha03400
]
VIBHAR_00344
Enzymes [BR:
vha01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
VIBHAR_00344
Messenger RNA biogenesis [BR:
vha03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VIBHAR_00344
DNA repair and recombination proteins [BR:
vha03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
VIBHAR_00344
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
Helicase_C
DEAD
HRDC
RecQ_Zn_bind
ResIII
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
ABU69366
UniProt:
A7MXT9
LinkDB
All DBs
Position
I:complement(329433..331310)
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AA seq
625 aa
AA seq
DB search
MHKHLFLRPNLRFFMTSTLLAEQSDSPLTPQRVLEDVFGYQEFRDGQQLVIDAAVEGRDS
LVILPTGGGKSLCYQIPALVRSGITLVISPLISLMKDQVDQLKANGVAAECINSTMPREE
LLSVYNRMYTGHIKLVYVSPERVLMRDFIERLENLPLSMIAVDEAHCISQWGHDFRPEYA
ALGQLKQQFSHVPFMALTATADDATRRDILDRLQLNNPEVYLGSFDRPNIRYNLVEKHKP
VSQIVRYLETQKGNCGIIYCGSRKKVEMVTEKLCNNHIRAAGYHAGMDADERAYVQEAFQ
RDDIQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPA
DISWLRRMLDEKDDGPQKQVETHKLNAMSAFAEAQTCRRQVLLNYFGEYREKPCGNCDIC
LDPPKHFDATEEARKALSCVYRVNQSFGMGYVVEVLRGMQNIRVRENGHDKISTYSIGRD
HSHDYWVSIFRQLIHKGLLFQNITRNSTLQLTEEARPLLRGDVTLALAVPRLDTAARAAK
SDKLTSKNYDKKLFAKLRKLRKSIADEDGLPPYVVFSDATLIDMAEILPTSYGEMLAVSG
VGQRKLEKYADPFLDLIQEHITHHG
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atgcataagcacctctttttaagacccaatctgagatttttcatgacctcgactttgcta
gccgaacaatctgattcgcctttgacgcctcaacgtgtgttggaggatgtgtttggttac
caagagttccgagatggtcagcaactggtgattgatgctgcagtagaaggtcgtgacagc
ttagttatcctacctactggtggcggtaaatcgctgtgttatcaaatccctgctttggtt
cgctctggtattactttggtgatttctccgctgatttcgctgatgaaagaccaagtcgat
cagcttaaagccaacggcgtggcggctgagtgcatcaactcgaccatgcctcgtgaagaa
ttgctcagtgtgtataaccgtatgtataccgggcatattaagttggtgtacgtctcgcca
gaacgcgtattgatgcgtgactttattgagcgcttggaaaacctgccgctatccatgatt
gccgttgatgaagcgcactgtatttcccaatggggacacgacttccgtccagaatacgcc
gcgcttggtcaacttaagcagcagttttcccatgtgccatttatggcgctgacagcgacg
gcggatgacgcaacgcgccgagatattcttgatcgtctgcaactgaataatccagaggtt
tacctaggcagcttcgaccgccctaacattcgctataacttagttgagaagcacaagccg
gtttcgcaaatcgttcgctatcttgaaacccaaaagggtaattgcggcatcatctattgt
ggtagccgtaaaaaagttgagatggtgaccgagaagctgtgcaacaaccacattcgtgcc
gctggttatcacgcaggtatggatgctgatgagcgcgcttacgttcaagaagctttccaa
cgtgatgacatccaaatcgtagtggcgactgtggcattcggtatgggcatcaacaaacca
aacgtgcgctttgtggttcactttgatatcccacgtaacatcgagtcttactatcaggaa
accggtcgtgcagggcgtgatggcttgcctgcggaagcgatgatgttgtatgacccagcg
gacattagttggctgcgtcgtatgttggatgagaaagacgatggtccgcagaagcaggtg
gaaacccacaaactgaatgcgatgagtgcctttgctgaggcgcagacttgtcgtcgtcag
gtgctattgaattactttggtgagtatcgcgagaagccatgtggcaactgcgatatttgc
ttagacccgccgaaacactttgatgcaacagaagaagcgcgtaaggcgctatcttgtgtg
taccgagtgaatcagagctttggtatgggctacgtagtggaagtgctacgtggtatgcaa
aacattcgggtacgtgaaaatggccacgataagatttctacctactcgatagggcgcgat
cacagccacgattattgggtgagtatcttccgtcaattaatccataaagggctgctgttc
caaaacatcacgcgtaactcaacgctgcaactcaccgaagaggcgcgtccgctgctccgt
ggcgatgtgactctggcgttagcggttccacgtttagacaccgcagcacgtgcggcgaaa
tcagataaactgaccagcaagaactacgacaaaaagctgtttgctaagttacgtaagctg
cgtaagtcgattgctgatgaagatggtttgccaccatacgtggtcttcagtgacgctacc
ttgattgatatggcggaaattctgccaacgtcttacggcgaaatgctggcagtcagcggt
gttggtcagcgcaagctggagaagtatgccgatccattccttgatttgattcaagaacac
attactcaccacggataa
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