Vibrio campbellii ATCC BAA-1116: VIBHAR_00351
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Entry
VIBHAR_00351 CDS
T00589
Name
(GenBank) hypothetical protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
vha
Vibrio campbellii ATCC BAA-1116
Pathway
vha03420
Nucleotide excision repair
vha03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vha00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
VIBHAR_00351
03430 Mismatch repair
VIBHAR_00351
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vha03400
]
VIBHAR_00351
Enzymes [BR:
vha01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
VIBHAR_00351
DNA repair and recombination proteins [BR:
vha03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
VIBHAR_00351
MMR (mismatch excision repair)
Other MMR factors
VIBHAR_00351
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
AAA_12
AAA_11
Motif
Other DBs
NCBI-ProteinID:
ABU69372
UniProt:
A7MXT0
LinkDB
All DBs
Position
I:complement(338567..340741)
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AA seq
724 aa
AA seq
DB search
MIDPSLLLDGLNDKQREAVAAPLENLLVLAGAGSGKTRVLVHRIAWLMSVEQASPFSIMS
VTFTNKAAAEMRGRIEELMMGSAGGMWNGTFHGICHRILRAHYLDAKLPEDFQIIDSDDQ
QRLLKRLIKAQNLDEKQWPARQVAWWINGKKDEGLRPSHIDAYHDPVTKTYLQLYTAYQE
ACDRAGLVDFAEILLRAHELLRDNKFVREHYQARFKHILVDEFQDTNNIQYAWLRMMAGP
ECHVMIVGDDDQSIYGWRGAKVENIEKFTLEFPSVNTIRLEQNYRSTKTILEASNALIAN
NTERMGKELWTDGVVGEPISVYSAYNELDEARFAVNKIKEWQDKGGALNDAAMLYRNNAQ
SRVLEEALIQAGLPYRIYGGMRFFERQEIKDALSYMRLIANRNDDAAFERVVNTPTRGLG
DKTLETIRFAARDRGCTMWEASVAMLDEKVLAGRAAGALSRFIELVTALEDDTIEMPLHH
QTDHVIKYSGLFAMYEQEKGEKSKARIENLEELVTATRQFEKPEEAEDMSLLTAFLTHAA
LEAGEGQADEFEDAVQLMTLHSAKGLEFPLVFMVGVEEGMFPSQMSAEEAGRLEEERRLC
YVGMTRAMQKLYITYAEMRRLYGQDKYHKPSRFIRELPETCLDEVRMKAQVSRPASSGRF
SQTAVKESFNETGFTLGSRVMHPKFGEGTIINFEGSGPQSRVQIAFNGEGIKWLVTAYAR
LEKL
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atgatagatccatctctattactcgacggtttgaacgacaaacaacgtgaagccgttgca
gcacctctagaaaacttgctcgtccttgctggtgcagggagtggtaagacacgcgttctt
gttcaccgtatcgcttggttgatgtcggtagagcaggcttctccgttctcaatcatgtcg
gtaacctttaccaataaggcggcggcagagatgcgtggacgtatcgaagagctaatgatg
ggcagtgcaggcggtatgtggaatggtactttccacggcatttgtcaccgtattctgcgt
gcgcactatcttgatgccaagctaccggaagatttccaaatcatcgacagtgacgaccaa
cagcgtctactgaagcgtttgatcaaagcgcaaaaccttgatgagaagcagtggccagca
cgccaagtggcatggtggatcaacggtaagaaagacgaaggtctacgtccgtcgcacatt
gatgcgtaccacgatccagtgaccaagacatatctgcagctgtacaccgcttaccaagaa
gcgtgtgatcgtgctggtttagtcgattttgcggaaatcttgctgcgcgcacatgagcta
ctgcgtgataacaagttcgttcgtgagcactaccaagcgcgctttaagcacatcttggtg
gacgagttccaagataccaacaacatccaatacgcttggctacgtatgatggcgggccct
gagtgtcacgtgatgatcgtaggtgatgacgatcagtcgatttacggttggcgtggtgca
aaagtcgagaacattgagaaatttacgctggaattcccaagcgtgaataccattcgtctt
gagcaaaactaccgttcaactaagaccattctggaagcgtccaacgctctgatcgcgaat
aacaccgagcgtatgggtaaagagctttggactgatggcgttgtcggtgagcctatctcg
gtatacagcgcttacaacgaattggatgaagcccgttttgcggtaaacaaaatcaaagag
tggcaagacaagggaggggctctgaatgacgctgcaatgctttaccgtaacaacgctcag
tcgcgtgttcttgaagaagcattaatccaagctggtctgccttaccgtatctacggcggc
atgcgattcttcgaacgtcaggaaatcaaagatgctttgagctacatgcgtttgattgcc
aaccgtaatgatgatgcggcatttgaacgtgtggtgaatacgccaacgcgtggcttgggt
gataagacgcttgaaaccatccgttttgcggctcgtgaccgtggttgcaccatgtgggaa
gcgagtgtggcgatgttggatgagaaggtgcttgctggtcgtgctgctggtgctttaagt
cgttttatcgagcttgttacggcactagaagacgacaccatcgagatgccgctgcatcac
caaactgaccatgtgattaaatattcgggcttgttcgcgatgtacgaacaagagaagggc
gaaaagtctaaggcgcgtattgagaacttggaggaattggtgaccgcaactcgccaattc
gagaaaccagaagaagctgaggacatgtcactgctgacggcattcctaacccacgcggca
ctagaagcgggcgaaggacaagcggacgagtttgaagatgcggttcagcttatgacattg
cacagtgcgaaaggtctagagttcccattggtgtttatggttggtgtggaagaaggcatg
ttcccaagccaaatgtcggcagaagaagcagggcgtttagaagaagaacgccgtctgtgt
tacgtaggcatgacccgtgcgatgcagaaactgtacatcacttatgctgaaatgcgccgt
ttgtacggtcaggataagtaccataaaccgtctcgctttatccgtgaactgccagaaact
tgtttagacgaagtacgcatgaaggcgcaagttagccgtcctgcaagcagcggtcgattt
agccaaacggcggtgaaagagagctttaatgaaactggctttacgctaggttctcgtgtg
atgcatccaaagtttggtgaaggcactatcatcaacttcgaaggcagtggtccacagagc
cgcgtacagattgcctttaatggcgagggcatcaaatggttggtgactgcttacgcacga
ctagagaaactgtaa
DBGET
integrated database retrieval system
