Vibrio campbellii ATCC BAA-1116: VIBHAR_01406
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Entry
VIBHAR_01406 CDS
T00589
Name
(GenBank) hypothetical protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
vha
Vibrio campbellii ATCC BAA-1116
Pathway
vha03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vha00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VIBHAR_01406
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vha03019
]
VIBHAR_01406
Enzymes [BR:
vha01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VIBHAR_01406
Messenger RNA biogenesis [BR:
vha03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VIBHAR_01406
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
AAA_19
UvrD-helicase
HEM4
Flavi_DEAD
FtsK_gamma
Motif
Other DBs
NCBI-ProteinID:
ABU70382
UniProt:
A7MZS6
LinkDB
All DBs
Position
I:1423380..1424615
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AA seq
411 aa
AA seq
DB search
MPFSKLGLSAPITDAVKALGYEKPTSIQQKAIPIVLSGRNLIAAAQTGTGKTASFVLPIL
EKLSQGETQRKKRARAIILTPTRELALQVHQSIEAYGKNLPLRSMAMFGGVDYAPQKQAL
IEGVDIVVSTPGRLIDLYGQRAIHFDEVEMLVLDEADKMLDMGFIDSIDKIVDCMPEDIQ
SLLFSATLSNPVRDLAKNAIVDPEEISIAKHSASKSNIKQWITTVDKDMKSSLLSHMLNE
NDWSQVLVFIETKHGAAKLVTQLEKRGIVAEAFHSGRNQRVRQELIEQFKAGEIQYLVAT
GVAARGIDIDNLPVVINYDLPYPADEYVHRIGRTGRAGAQGEAISLVSKDDFKNLCMIES
RLGHLLERVEIEGFAPRKPVPISILNYVPKNKRKPQDQRPRRDNGDKRDSK
NT seq
1236 nt
NT seq
+upstream
nt +downstream
nt
atgccattttctaagcttggtttaagcgctcctatcacagatgctgtgaaggcgctaggt
tatgaaaaaccgacttctatccaacaaaaagccattcctattgttctgagtggtcgtaac
ctgattgccgcagcacaaaccggtacgggtaaaactgccagctttgtattgccaatctta
gaaaaattgagccaaggtgaaacgcaacgtaaaaagcgtgcacgtgcgatcatcctaaca
ccaacgcgcgagcttgcacttcaagtacaccaaagtattgaagcttacggtaagaactta
ccgttgcgttcaatggcgatgttcggcggtgtagattacgcaccgcaaaaacaagcgctg
atcgaaggtgtcgatattgtcgtaagtacgccaggacgtttgattgacctttacggccaa
cgcgccattcactttgatgaagtggaaatgctggtgctggacgaagccgataaaatgtta
gatatgggcttcatcgattcgatcgataagatcgtcgattgcatgccagaagacattcaa
agcttgctgttctctgcaacgctatcaaacccagtacgtgatttggcgaagaacgcgatt
gtcgatcctgaagaaatctcgattgcgaaacacagcgcatcaaaatcaaacatcaagcag
tggatcaccacggttgataaagacatgaagtcgtcactgttgagccacatgctaaacgag
aacgactggtcacaagtattggtattcatcgaaaccaaacacggtgcagcgaagctagtg
actcagttagagaagcgcggcatcgtggctgaagcgttccacagtggtcgcaaccaacgc
gttcgccaagagctgattgaacagttcaaagcgggtgaaattcaatatctggttgcaacg
ggtgttgcggcacgtggtatcgatatcgacaacttgccagtggtgatcaactacgatttg
ccatacccggcagacgaatacgtgcaccgcattggtcgtactggtcgtgctggcgcgcag
ggtgaagcgatttcattggtatcgaaagacgatttcaaaaacctatgcatgattgaaagc
cgtcttggccacttattagagcgtgtagaaattgaaggttttgcgccaagaaagcctgtg
ccaatttcaattctaaactacgtgccaaagaacaagcgaaaaccgcaagatcagcgtcct
cgtcgtgataatggcgacaagcgcgattctaaataa
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