Vibrio campbellii ATCC BAA-1116: VIBHAR_01574
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Entry
VIBHAR_01574 CDS
T00589
Name
(GenBank) hypothetical protein
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
vha
Vibrio campbellii ATCC BAA-1116
Brite
KEGG Orthology (KO) [BR:
vha00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vha03032
]
VIBHAR_01574
03400 DNA repair and recombination proteins [BR:
vha03400
]
VIBHAR_01574
Enzymes [BR:
vha01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
VIBHAR_01574
DNA replication proteins [BR:
vha03032
]
Prokaryotic type
DNA Topoisomerases
VIBHAR_01574
DNA repair and recombination proteins [BR:
vha03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
VIBHAR_01574
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Topo_Zn_Ribbon
TOP1_ZnF
Toprim
zf-C4_Topoisom
Zn_ribbon_recom
Motif
Other DBs
NCBI-ProteinID:
ABU70544
UniProt:
A7N1K5
LinkDB
All DBs
Position
I:1579365..1581995
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AA seq
876 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGKDFIVKSSVGHVRDLPTAGQSTGEKKAAAISTKGMSPE
EKARVKKEKDRKALIKKMGINPYHDWDANYQILPGKEKVVSELQKLAKDADYVYLATDLD
REGEAIAWHLREIIGGDEERYKRVVFNEITKNAIQQAFQTPGELNMDGVNAQQARRFMDR
VVGFMVSPLLWKKVARGLSAGRVQSVAVKLLVEREREINAFIPEEFWDINANTHTKDKTA
FKLLVAQKDGVAFKPVNEAETKAALSVLEKASYEVCKREDRPTKSKPSAPYITSTLQQAA
STRLGYGVKKTMMLAQRLYEAGYITYMRTDSTNLSAEAVDAVRGFIGSEYGDKYLPAKPL
TYGSKEGAQEAHEAIRPSDVSVKSEDLQGVDADAHKLYSLIWNQFVACQMTPAEYDSTTI
SVKAAEYTLKAKGRILKFDGWTRVQRPMGKNEDTILPAVQLGEKLDLESLEPKQHFTKPP
ARFTEAALVKELEKRGIGRPSTYASIISTIQDRGYVKVEQRRFYAEKMGEIVTDRLDDSF
NDLMNYDFTARMEQKLDQIAEGDVMWKDVLDNFFTDFTGDLEKAEQDENEGGMKLNHIVM
TDIECPTCGRPMGIRTASTGVFLGCSGYALPPKERCKTTINLGDEDGIINVLEEDVETAA
LRAKKRCPICETAMDAYLIDDKRKMHVCGNNPNCEGYIVEHGEFKVKGYDGPVVECDKCG
SDMVLKNGRFGKYMDCTSETCKNTRKILKNGEVAPPKEDPVHFPELPCENSDAYFVLRDG
ASGLFMAASNFPKSRETRAPLVSELARFEERLPEKFKYLTTAPAADPDGRPAVVRFSRKS
KENYVRTEDNGKPSGWTALFVDGKWEITDKRKKAKA
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaatcgctcgttatagtggagtcaccagccaaggctaagacgataaataaatat
cttggtaaagactttattgttaagtctagtgttggtcacgtgcgtgatctgcctacggcc
ggtcaaagcactggtgagaaaaaagccgctgccatttctacaaaaggaatgagcccggaa
gagaaagcgcgtgtcaaaaaagaaaaagaccgcaaagcgctaatcaaaaaaatggggatt
aacccatatcatgactgggatgcgaattaccaaatccttccaggcaaagaaaaagtcgta
agcgaactgcaaaaattagccaaagacgctgattacgtttacctcgcaaccgatttggac
cgcgagggggaagcaatcgcatggcaccttcgtgagatcatcggtggcgatgaagagcga
tacaagcgcgtagtgtttaacgagatcactaagaatgctatccaacaagctttccagaca
cctggcgagctaaacatggacggtgttaacgcacagcaagcacgtcgattcatggaccga
gtagtaggtttcatggtttctccattgctatggaagaaagttgcgcgtggtctttcagca
ggtcgcgtacaatcagtagcggtgaagctattggttgagcgtgagcgtgaaatcaacgct
ttcattccagaagagttctgggatatcaacgcgaatacgcacaccaaagacaagaccgca
ttcaaattgcttgttgcacaaaaagatggcgttgcgtttaagccagtcaacgaggcagag
accaaagcagcgctttcggtactggaaaaagcgagctacgaagtttgtaagcgtgaagac
cgcccaacaaagagtaagccttctgcaccgtacatcacttcaacactgcaacaagcggca
agcactcgtcttggctacggcgttaagaagacaatgatgctcgctcaacgtttgtatgaa
gcgggttacatcacctatatgcgtaccgactctaccaacttgagtgcggaagctgtagat
gcggttcgtggattcatcggctctgagtatggtgacaagtatcttcctgctaaaccgcta
acatacggtagcaaagagggcgcacaagaagcgcacgaagcgattcgtccttccgatgtt
tctgtgaaatcagaagatctacaaggtgttgatgcggacgcacacaaactttactcattg
atctggaatcagttcgttgcttgtcaaatgacgccagcagaatacgattcaacaacaatc
agtgtgaaagcggcagaatacacgctaaaagcgaaaggccgtatccttaagtttgacggt
tggactcgcgtacaacgcccaatgggtaaaaacgaagatacgattcttccagctgttcag
ctaggcgaaaagctagacttagagtcattagagcctaaacagcactttactaagccacct
gcacgttttacagaagcggcattggttaaagagcttgagaagcgcggcattggccgtcct
tcaacttacgcttcaatcatctctacgatccaagatcgcggttacgtgaaagttgaacag
cgtcgtttctatgcagaaaagatgggcgagatcgttactgaccgcctagatgacagcttt
aacgacctaatgaactacgacttcacggctcgtatggaacagaagcttgaccaaatcgca
gaaggcgatgtgatgtggaaagatgttctagacaacttcttcacagacttcactggcgat
cttgagaaagcggaacaggacgaaaacgaaggcggcatgaaactgaatcacattgtgatg
acagatattgagtgtccaacttgtggtcgtccaatgggtattcgtactgcgtctaccggt
gtgttccttggctgttctggttacgcattgccacctaaagagcgttgtaagacaacgatt
aacttaggtgacgaagatggcattatcaatgttctagaagaagatgtggaaactgcagca
ctgcgtgcgaagaagcgttgtcctatctgtgaaacagcgatggatgcatacctgatcgac
gataagcgtaagatgcacgtttgtggtaacaacccgaactgtgaaggctacatcgttgaa
cacggcgagttcaaagtgaaaggctacgatggcccagttgttgagtgtgacaagtgtggt
tctgacatggtgcttaaaaacggtcgcttcggtaaatacatggactgtacgagtgagacg
tgtaagaacactcgtaagattctgaagaatggcgaagttgcgccaccgaaggaagaccca
gttcatttccctgaactgccatgtgaaaactcggacgcttactttgttctgcgtgatggt
gcttctggcctatttatggcagcaagcaacttccctaaatcacgtgaaactcgtgctccg
ttggtgtctgaactggctcgcttcgaagaacgtcttccggagaagtttaagtacctaacg
acagcgccagcagcggatccagatggtcgccctgcagtggttcgctttagccgtaagagc
aaagaaaactacgtgcgtactgaagacaatggcaaaccaagtggttggactgcgttgttt
gttgacggtaagtgggaaatcacagataagcgcaaaaaagcaaaagcttaa
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