Vibrio campbellii ATCC BAA-1116: VIBHAR_02918
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Entry
VIBHAR_02918 CDS
T00589
Name
(GenBank) hypothetical protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
vha
Vibrio campbellii ATCC BAA-1116
Pathway
vha03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vha00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VIBHAR_02918
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vha03019
]
VIBHAR_02918
03009 Ribosome biogenesis [BR:
vha03009
]
VIBHAR_02918
Enzymes [BR:
vha01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
VIBHAR_02918
Messenger RNA biogenesis [BR:
vha03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
VIBHAR_02918
Ribosome biogenesis [BR:
vha03009
]
Prokaryotic type
rRNA processing factors
VIBHAR_02918
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ABU71871
UniProt:
A7MVF4
LinkDB
All DBs
Position
I:2936837..2939944
Genome browser
AA seq
1035 aa
AA seq
DB search
MKRMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPEGYTYQGRPSIKEVLTEGQEVIVQVEKEERGSKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDERTQLKAALSTLELPQGMGLIVRTAGVGKSAEEL
EWDLNVLLNHWSAIKGAADSNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNTIYERA
KEHIKLVRPDFISRVKKYDGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVEN
RLREAVRLDRARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCTGTGVVRDNESLAL
SVLRLIEEEALKDNTAQVLAVVPVPIASYLLNEKRRSVNHIERTQEVKITVVPNSDMETP
HFEVIRVREGEEFDLLSYLLPKKLEAMKEAEGKEPAEVDIKPKRIEEPVLKGFAAPTQTA
PAPAATSKPAPAAKKKEAAPQEEKPGLISRMFKALGSFLFGGSEEVKEEPKKEEKKPNRD
NKRNKRDRNDRRRNNNQRDNREGRDNRDNKRRRKPREEQATEQNETQQQPNKQQNRNQKR
KPRAQQAEKAQEPKANAKVAEKGLQLAAEARTGTEAKPEESKAKSNAKAEKVKERRQRRK
LNKSVRVKDQQAAEKAEQEVPVQTIVEAVEAPVEKPVEAAAEAQQDNKAESKQRRNRRSP
RHLRASGQRRRRGRDRRPNPFRLRKGGVASPEMAMGKVMPRYIPKPAPKKEERVKEEAAV
VATAVPAIQGGFACPEMAMGKVIIRREQPAVVEAPVVEPKVQQPVETKVEAPVVETPVAA
APVVEAAVVEQAETVAAEATPVEPIVEAPVVETTETAVAEAAPTQEPVVEVVAETVEQVP
AEAKVETPEPKAEVIKVATKPRAIAPMTKAPGPQELREITVTAAPFKAERYAPKGAGSQV
ATNRASAGMTKPNFS
NT seq
3108 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaattaacgcaactcaaaaagaagagttgcgtgtcgctctggttgat
ggccagcgacttttcgatcttgatatcgagagtccaggtcatgaatctaaaaaagcgaat
atctacaaaggacgtatcacacgtatcgaaccaagcttagaagccgcatttgttgactac
ggtgctgagcgtcacggtttccttcctcttaaagaaattgcccgcgaatacttccctgaa
ggttacacttaccaaggccgtcctagcattaaagaagtgctaacagaaggccaagaagtg
atcgtgcaagtggaaaaagaagaacgtggtagcaagggcgcagctctaactactttcatc
tctcttgcgggtagctaccttgttcttatgcctaataaccctcgtgccggcggtatttct
cgtcgtatcgaaggtgatgagcgtacacaacttaaagctgcactaagcactctggaattg
cctcaaggcatgggcctgattgttcgtactgctggcgttggcaagagcgcagaagaacta
gagtgggatttgaacgtactacttaaccactggagcgcgattaagggcgcggcagattct
aaccctgccccattcctaatccaccaggaaagtaacgtaatcgttcgtgcaatccgtgac
tacctacgtcgtgatatcggtgaaatcctaatcgacagcaacaccatttatgagcgtgct
aaagagcacatcaaattggttcgtcctgatttcatcagccgcgttaaaaaatacgatggc
gaagtaccactgttcagccactaccaaatcgaaagccaaattgaatcggctttccaacgt
gaagtgcgcttaccatctggtggttctatcgtaatcgacccaacagaagcactgacttct
atcgatatcaactctgctcgcgcaacgaaaggcggcgatatcgaagaaacagcacttaat
accaacctagaagcagcagacgaaatcgctcgtcaattgcgtctacgtgaccttggtggt
ctggttgttatcgacttcatcgatatgacgccagtacgccaccagcgtgaagttgaaaac
cgtctacgtgaagccgttcgtctagatcgcgcccgcgttcaaatcggtcgcatttctcgc
ttcggtcttttggaaatgtctcgtcaacgtttgagcccttctctagcggaagcaagccac
catatttgtcctcgttgtacgggtacaggtgtggttcgtgacaacgagtctctagcactt
tctgttcttcgtcttattgaagaagaagcgcttaaggacaacacagcacaagtacttgct
gtggtacctgtgccaatcgcgtcttaccttctaaacgaaaaacgtcgctctgtgaaccac
attgaacgcactcaagaagtgaagatcactgttgttcctaactcagacatggaaacgcct
cactttgaagttatccgtgttcgtgagggtgaagagttcgacctgctttcttacctactt
cctaagaaactggaagcgatgaaagaagcagaaggcaaagagcctgcagaagttgatatt
aagcctaagcgcatcgaagagcctgtactgaaaggtttcgcagcgccaacgcaaactgca
ccagctcctgcagcaacgtctaaacctgcaccagctgcgaagaagaaagaagctgcgcca
caggaagaaaaaccaggtctaatcagccgtatgtttaaagcgcttggcagtttcctattc
ggtggttctgaagaagtaaaagaagagcctaagaaagaagagaagaagccaaaccgcgat
aacaagcgcaacaaacgtgaccgcaacgatcgtcgtcgcaacaacaaccaacgcgataac
cgcgaaggtcgtgacaaccgcgataacaaacgtcgccgtaagccacgtgaagagcaagcg
actgagcaaaacgaaacgcaacagcagcctaataagcagcaaaaccgcaaccagaaacgt
aagcctagagctcaacaagctgaaaaagcacaagagccaaaagcaaatgcgaaggtagcg
gaaaaaggtctgcaacttgccgctgaagcacgcactggtacagaagcgaagccggaagaa
agcaaagcgaagtcaaacgcgaaagcagagaaagtgaaagagcgccgtcagcgtcgcaaa
ctgaacaaatctgtacgcgttaaagatcagcaagcggcagagaaagctgaacaggaagta
cctgtacaaacaatcgttgaagcggttgaagcacctgttgaaaagccagttgaggcagca
gcagaagcacaacaagacaacaaagcagaatctaaacagcgtcgtaaccgtcgttcacca
cgtcacctacgtgcaagtggccaacgtcgtcgtcgcggtcgcgatcgtcgccctaaccca
ttccgcctacgcaaaggtggtgtagcctctcctgagatggcaatgggtaaagtaatgcca
cgctacattccaaaaccagcgcctaagaaggaagagcgagtgaaggaagaagcagcggtt
gttgcaacagcagtacctgcaatccaaggtggttttgcttgtcctgaaatggcgatgggt
aaagtgatcattcgccgtgagcaacctgcagtcgttgaagcgccagtagttgaaccaaaa
gttcaacaacctgtagaaacgaaagtagaagctccagttgtagaaacaccggttgcagca
gcaccagtagttgaagcagcagttgtagagcaagctgaaactgtagcagcagaagcgaca
ccagttgagccaatcgtagaagcacctgtagttgaaacaactgaaactgcagtagcagaa
gcggcgccaactcaagagccagtagtcgaagtagtagcagaaactgtagaacaagttcca
gcggaagcgaaagtagaaacaccagagcctaaagcagaagttatcaaggtagcgaccaag
ccacgtgcgatcgcaccgatgacaaaagcgccgggtcctcaagagcttcgcgaaatcacc
gttacagcagcaccgtttaaagctgaacgctacgcaccgaaaggcgcaggtagccaagta
gcaacaaaccgtgcgtctgcaggtatgacaaagccaaactttagctaa
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