Vibrio campbellii ATCC BAA-1116: VIBHAR_03087
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Entry
VIBHAR_03087 CDS
T00589
Name
(GenBank) hypothetical protein
KO
K02343
DNA polymerase III subunit gamma/tau [EC:
2.7.7.7
]
Organism
vha
Vibrio campbellii ATCC BAA-1116
Pathway
vha03030
DNA replication
vha03430
Mismatch repair
vha03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vha00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
VIBHAR_03087
03430 Mismatch repair
VIBHAR_03087
03440 Homologous recombination
VIBHAR_03087
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vha03032
]
VIBHAR_03087
03400 DNA repair and recombination proteins [BR:
vha03400
]
VIBHAR_03087
Enzymes [BR:
vha01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
VIBHAR_03087
DNA replication proteins [BR:
vha03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
VIBHAR_03087
DNA repair and recombination proteins [BR:
vha03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
VIBHAR_03087
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_tau_5
DNA_pol3_delta2
DNA_pol3_gamma3
DNAX_ATPase_lid
DNA_pol3_tau_4
AAA
RuvB_N
AAA_22
AAA_5
AAA_16
ResIII
AAA_14
AAA_2
AAA_18
Mg_chelatase
AAA_assoc_2
Motif
Other DBs
NCBI-ProteinID:
ABU72036
UniProt:
A7MUE6
LinkDB
All DBs
Position
I:complement(3110393..3112603)
Genome browser
AA seq
736 aa
AA seq
DB search
MSYLALARKWRPNKFDQVVGQNHVLTALENALAQNRLHHAYLFSGTRGVGKTSIGRLFAK
GLNCETGITANPCGECDTCREIDEGRFVDLLEIDAASRTKVEDTRELLDNVQYKPARGRF
KVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQFHLKPISV
DDIHQQLDHILEKEQVSAEARALGMISHAADGSMRDALSLTDQAIALGNGTIQTDIVSHM
LGTIDTDQAIHLLESISSKQPQQAMDKIQQLASNGVEWDGLLQQLASQLHRVAMYQALPS
TLDQAQPDAEKIELLSKALTPQDVQLYYQIALKGREDLTLSPNGRVGMEMIVLRMMAFRP
SASNGANVISTSSQPQVAPAASTSQPKAAPQQPSQQTSSQQTSSQQQPVSQAPAQRMQSR
PMTSAPQQQAVSQPTSQPAAHNPATMNEAPQYQPEYQGGYDMAPQYDMAPPMSENPVPTQ
QAPQQAQLQESAPAPARSNLSGLRHQLRSQRQGQQQQQAPGQSGGPKKSNATSAQKESVI
DRLAQLHGNSAQVSPKSAPQAEKQAPEDEAYRWRPTKPVEKKANTQLTPTQLKQALEHEK
TPEMAQKLVDESLEKSEWANLISKMDTPKLVEQLALNSHFNKEGSTVSLQLRGSQAHLNT
DRAQSELHSALNHVLGEECHLSIDVSESGETPLELRDRLYQEKLQQALNSLENDPHVQFI
ERRFAAELDKDSVRPI
NT seq
2211 nt
NT seq
+upstream
nt +downstream
nt
atgagttatttagctttagcgcgaaaatggcgtcctaacaagtttgatcaagtcgtcggg
cagaaccatgttctgacggctctagagaacgcgttagcgcaaaatcgcttacaccatgcg
tacctatttagcggtacgcgaggcgttggtaaaacgtcgattggccgactgtttgctaag
ggcctgaactgtgaaacggggattactgctaacccttgtggtgagtgtgatacctgtcgt
gagattgatgaaggtcgctttgttgacctattagagatcgatgcagcttctcgtactaaa
gttgaagacactcgtgaactgttagacaacgttcaatacaaacctgctcgtggacgtttt
aaagtgtacctcatcgatgaggtacacatgctttcgcgtcactctttcaatgcgctgtta
aaaacgcttgaagagccgcctgagtatgtgaagttcttgttggctacgacggatccacaa
aaactgccagtgacgattttgtcgcgctgtttgcagttccacctcaagccaatcagtgtt
gatgatattcatcagcaacttgaccatattctggaaaaagaacaagtttctgcagaagca
agagcacttggcatgatctcgcacgctgcagatggcagtatgcgtgatgcacttagcctt
actgaccaagctatcgccctaggtaacggtacgattcaaaccgatatcgtaagccatatg
cttgggacgatcgatactgaccaagcgattcacttgctggaatcgatcagcagtaagcaa
cctcaacaggcgatggacaaaatccagcaacttgcatcaaacggtgtggagtgggatgga
ttgttacaacaattggcatcgcagcttcaccgtgtcgcgatgtaccaagctctgccatcg
accttggatcaggctcaacctgatgctgaaaaaatcgaattattgagtaaagctctcacg
ccacaagatgttcagctttactaccaaattgctttaaaagggcgtgaagatctgacgttg
tcacctaatggtcgcgtcggtatggaaatgattgtattgcgtatgatggcattccgccca
tcagccagtaacggtgcaaacgtaatttcgacgtcatcacagccacaagtcgcgccagct
gcgagtacgagtcagccaaaagcggctccacagcagccatctcaacagacatcatctcaa
cagacatcatcgcaacagcaaccagtgtctcaagcgcctgcacagcgaatgcaaagtcgc
ccgatgacatcggcaccgcaacaacaagccgtatctcagccaacgagccagccagcggcc
cataatccagctacgatgaatgaagcgccacagtaccaacctgaatatcagggtggctac
gacatggctccacaatatgatatggcaccaccaatgagtgagaaccctgtaccaacgcag
caagctcctcaacaggctcagctacaagagagtgcgccggcaccagctcgcagtaacttg
agtggcctgcgccaccaattacgctcacagcgccagggacagcaacagcaacaagcacct
ggacaaagtggtggtccaaaaaagtctaacgcgacatctgcacaaaaagaatcggttatt
gaccgtctagcgcaattgcatggcaattccgcgcaggtgtcgcctaagtctgctcctcaa
gctgaaaaacaagctccagaggatgaagcgtaccgttggcgaccaaccaaaccggttgaa
aagaaagccaatacgcaattgacacctacgcagctcaagcaagcgctagagcatgaaaag
acgccagaaatggcgcaaaaactggttgatgaatcactagagaaaagcgagtgggcgaac
ctgattagcaagatggatacgcctaagttggttgaacaacttgcattaaactcgcatttc
aacaaagaaggctcgacagtttcgctacaattaagaggcagtcaggcacacttgaacacc
gacagagcgcaaagtgagctgcacagtgcactgaaccatgtgttgggtgaagagtgtcat
ctgagtattgatgttagcgaaagtggtgagacgccactagagttgagagatagactctac
caagagaaattacagcaagcgctgaacagtttagaaaacgatccgcacgtacaattcatc
gagcgccgtttcgcagcagagcttgataaagatagtgtacgtcctatctaa
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integrated database retrieval system
