Vibrio campbellii ATCC BAA-1116: VIBHAR_03301
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Entry
VIBHAR_03301 CDS
T00589
Name
(GenBank) hypothetical protein
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
vha
Vibrio campbellii ATCC BAA-1116
Pathway
vha03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vha00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
VIBHAR_03301
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vha03400
]
VIBHAR_03301
Enzymes [BR:
vha01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
VIBHAR_03301
DNA repair and recombination proteins [BR:
vha03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
VIBHAR_03301
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_25
SLFN-g3_helicase
ResIII
AAA_11
Motif
Other DBs
NCBI-ProteinID:
ABU72249
UniProt:
A7N1R6
LinkDB
All DBs
Position
I:complement(3324547..3328185)
Genome browser
AA seq
1212 aa
AA seq
DB search
MAQMSVPTPLQTMIFPLHGARLIEASAGTGKTFTIAGLYLRLLLGHGTANTKHRVPLTVD
QILVVTFTEAATAELRDRIRARIHDARIAFARGKSSDPVIQPLLGEIEDHKQAAEILLQA
ERQMDEAAVYTIHGFCQRMLTQNAFESGSRFNNEFVTDESHLKAQVVADYWRRNFYPLPF
ALAGEVRQLWGSPSDLLYDISNYLTGAPLSLSVPAMQGSLADLHEQNLKQIDALKGHWRD
SQDDFLALISDSDVNKRSYTKKSLPTWLEAVNVWASTETTGYDYPDKLEKFAQNVLLEKT
PKGTAPQHPVFEAIEAFIANPISLKAPLLAHAIEHCRVMLAKAKNQKQWLSFDDLLTQLS
ASIDTDETALLTERIRTLYPVAMIDEFQDTDPLQYSIFSRIYLDNPECGLFMIGDPKQAI
YGFRGADIFTYIKARNQVSAHYTLGTNWRSSADMVLAVNQIFALPDSPFIYDSDIPFHSV
DYSPSADKRVWTMGGQKQPALTYWLQEAEDKPLPKGEYLTAMAEATASQIQTILTAAQQG
QACLVNGEKQKPVKAGDIAVLVRTGSEGRMVKQALADQGIASVYLSNRDSVFTSSVAQDL
QRLLQAVLTPENDRALRASLASELFALDAASLDALNNDETVWENAVNEFKEYRKLWVQRG
VLPMLRAVISKRHIAERLLEEGTSSQSENGERVLTDLMHIGELLQQASNELDSDHGLLRW
LAQSISDAEHGLGGSDGQIQRLESERNLVQIVTIHKSKGLEYDLVFLPFVFGYREASEAK
YYDAENDRTVLDITGNDASLKQADKERLAEDLRLIYVALTRAVYACFIGASPLRNGRSTK
EPTGVHHSAIGYLVQNGQEGGINDLFVGLKKQQESFDNVVICDPPKQHDEMYVAEQTELE
ALTAKELKTPIDRNWRITSYSGLVKQGSHHAEHDATIEITGFDIDSSEEQDEAELVEPER
SIFNFPRGARPGTFLHSLFEEIEFTQPATTEENTQIILGLMESEQLDEEWLPILQQLIDN
VLATPLDSKALLLNQKGPAQRLVEMEFLLPIEVLSAPALNRVIQRHDPLSAKAGDLGFQT
VQGMLKGFIDLVFEHQGKYYVLDWKSNHLGDDVFHYHGDALKSAMADHRYDLQYQIYALA
LHRFLRSRLPNYDYEQHFGGVYYLFLRGMDGQSDHGIFSAKPTFEFLQEMDHLIDGQAPD
TRSSASGQMELI
NT seq
3639 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaaatgtcagttccaactccactgcaaaccatgatttttccactgcatggtgca
aggttaattgaagcatcggcaggtacaggtaaaacctttacgatcgcgggtttgtatctg
cgacttctactagggcatggcactgccaataccaaacatcgcgtgccgttgaccgtggat
caaattctggtcgtgacctttaccgaagctgcaacggcggagctgcgtgatcgtattcgt
gcgcgtattcacgacgcgaggatcgcattcgctcgcgggaaaagctcagatcctgtgatt
caacctttgttgggagaaatcgaggatcataagcaagccgctgagatcctcttgcaagcg
gaacgccaaatggatgaagccgcggtgtacaccattcacggtttctgccaacgcatgctg
acgcaaaacgcattcgaatccggtagtcgcttcaacaatgagtttgtgacagacgaaagc
catctcaaagcgcaagtggttgccgattactggcgtcgtaatttctatcctctgccattc
gctttggctggagaagtgcgtcaactatggggctcgccatcggatctgttgtatgacatc
agcaactacctcacaggcgcgccgctaagtctctctgttccagcaatgcaaggtagcctt
gccgatttgcatgagcaaaacttaaagcaaattgatgctttgaaaggccattggcgtgat
agccaagatgatttcctcgcactgatttctgattccgacgtcaacaagcgcagctacacc
aaaaagtctctaccgacttggttagaagcggtcaacgtatgggcttcgacagaaaccacg
ggctatgactatccagataagctggagaagttcgcccagaatgtgttacttgagaaaacc
ccgaaaggcactgcaccacaacaccccgtgtttgaggcgatagaagccttcattgccaac
ccaatcagcttaaaagcgccattgttagctcatgcgattgagcattgtcgcgtgatgctg
gcaaaagcaaaaaatcagaaacaatggttgtcattcgatgacttgctgactcagctttct
gcctcgattgataccgatgaaaccgcactactgacagagcgcattcgcacgctttatccg
gttgcgatgatcgatgaattccaagataccgacccactgcaatacagcattttcagtcgc
atttatttggataatcctgagtgcggtttgtttatgatcggtgacccgaaacaggcgatt
tacggtttccgtggagcggacatcttcacttacatcaaggctcgtaaccaagttagtgct
cactacacgcttggcaccaactggcgatcaagtgccgatatggtattggcagtgaaccag
atttttgctctgccagatagcccgtttatttatgactccgacattccattccattcagtg
gattacagcccaagtgcagacaaacgtgtttggaccatgggtggtcaaaagcagcctgca
ctgacttattggctgcaagaagcggaagataaacctctgccaaaaggtgaatacctgacc
gctatggctgaggcgacagcaagccaaattcaaaccattttgaccgcagcgcaacaaggt
caagcctgtctggttaatggcgaaaagcagaagccagttaaagcgggcgacattgcagtg
ttggtgcgaacgggtagcgaaggtcgcatggtcaaacaggcgttagccgaccaaggcatt
gccagcgtgtacctttctaaccgcgatagcgtgtttaccagttccgttgcacaagatcta
cagcgtttgctgcaagcggtgttaacgccagaaaacgacagagcattacgcgccagtcta
gcatcagaattgttcgctcttgatgcagccagcttagacgccctcaacaacgatgaaacc
gtgtgggaaaatgcggttaacgagttcaaagaataccgtaagctttgggtgcaacgtggt
gtgctacctatgctgcgtgcagtgatcagtaagcgtcatattgctgagcgtctactagaa
gaagggacgagctcacaaagcgaaaacggtgagcgagtgcttaccgatctgatgcacatt
ggtgaattattgcagcaagcaagtaacgaattagacagcgaccacggcttgctacgttgg
ttagcgcaatccatcagcgatgcagagcacgggttgggtggcagcgatggccaaattcag
cgtttggaatcagagcgtaacttggtgcaaatcgttaccattcacaaatccaaaggtctg
gaatatgacttggtcttcctgccatttgtgtttggctaccgagaagcgagtgaggccaaa
tactacgacgctgagaacgatcgcaccgtacttgatatcacgggtaacgatgcgtcgtta
aaacaggcagataaagaacgccttgctgaagacttacgccttatctatgtagcgttaacg
cgtgccgtgtatgcctgctttattggtgcttcaccgctgcgcaatggtcgctcaaccaaa
gagccaaccggcgtgcatcacagtgcgattggttacttggtgcaaaatggtcaagagggt
ggcatcaacgacctgtttgttgggttgaagaagcaacaagagagtttcgataacgtggtg
atttgtgatcctccaaagcaacacgacgagatgtatgttgcggagcaaaccgagttagaa
gcgttgacagctaaagagctgaaaaccccaattgatagaaactggcgaatcaccagttac
tcgggcttggttaaacaaggttctcatcatgctgagcatgacgcgacgattgaaattacc
ggctttgatatcgattcttcagaagagcaagatgaggcggaattggttgagccagaacgc
tctatcttcaacttcccgcgtggcgcacgtccgggtacttttctgcacagcttatttgag
gaaattgagtttactcaacccgcgacaacggaagagaacacccaaatcatcctcggcttg
atggaaagtgagcagcttgatgaagagtggctaccaatcctgcaacagttgattgataac
gtgctggcaacgcctttggatagcaaagcactgctgctcaatcaaaaaggccccgcacaa
cgtttggttgagatggaattcttactgccgattgaagtgctatctgcaccagcattgaat
cgtgtgattcaacgtcatgatccgctgtctgctaaagctggcgacctgggtttccaaacc
gtgcaaggcatgttgaaaggctttattgacttggtgtttgagcaccaaggtaaatactac
gtcctcgactggaaatcgaaccacttaggcgatgatgtgttccattatcatggcgatgcg
ttgaagtcggcgatggcggatcatcgctacgatctgcaataccaaatctacgccttggcg
ctgcatcgtttcttacgcagcagattgccaaattatgattatgaacagcactttggtggt
gtttattacctgttcttgcgtggtatggatgggcagagtgatcacggtattttttctgcc
aagccaactttcgaatttttacaagaaatggatcacttgattgatggtcaggcacctgac
acacgatccagtgcatcgggtcagatggagttaatttga
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integrated database retrieval system
