Vibrio campbellii ATCC BAA-1116: VIBHAR_03394
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Entry
VIBHAR_03394 CDS
T00589
Name
(GenBank) hypothetical protein
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
vha
Vibrio campbellii ATCC BAA-1116
Brite
KEGG Orthology (KO) [BR:
vha00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vha03016
]
VIBHAR_03394
Enzymes [BR:
vha01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
VIBHAR_03394
Transfer RNA biogenesis [BR:
vha03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
VIBHAR_03394
Prokaryotic type
VIBHAR_03394
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
TruB-C_2
Motif
Other DBs
NCBI-ProteinID:
ABU72341
UniProt:
A7MZI3
LinkDB
All DBs
Position
I:complement(3432246..3433190)
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AA seq
314 aa
AA seq
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MARRRKGRPINGVILLDKPTGISSNDALQKVKRIFFAEKAGHTGALDPLATGMLPICLGE
ATKFSQFLLDSDKRYRVIAKLGERTDTSDSDGEVVETRPVDVNLEKLEACIDTFRGESDQ
VPSMFSALKYQGKPLYEYARKGIEVPRESRKITVYEIILHRFEGDEVEMEVHCSKGTYIR
TIVDDLGEMLGCGAHVTMLRRTGVAKYPYEKMVTLEQLNELLEQAHRDEVAPKELLDPLL
LPMDTAVEDLPEVNLKAELTNLVQHGMPVQVLGAPEGTPIRMTSGEDKLFIGVAEVNDDG
KVAPKRLVVFRDEE
NT seq
945 nt
NT seq
+upstream
nt +downstream
nt
atggctcgtcgtcgtaaaggtcgtccaattaatggcgttatcttgttggacaaaccaaca
ggtatttcttccaatgatgcactgcaaaaagtaaaacgtattttctttgctgaaaaagca
ggtcatacgggtgcattggacccactagcgacgggcatgttgccaatctgcttaggcgaa
gcaactaagttctctcagttcttgttggattcagacaaacgctatcgcgtaatcgcaaag
ttgggtgagcgtactgatacgtctgactctgatggcgaagtggtagagacgcgtccagtt
gacgtgaaccttgagaagttagaagcgtgcatcgacacgttccgtggtgaatcagaccaa
gtaccttcaatgttctctgcattgaaataccaaggtaagccattgtacgagtacgctcgt
aaaggcattgaagtgccacgtgaatctcgcaagatcaccgtatacgaaatcatacttcac
cgctttgaaggtgacgaagttgagatggaagtacactgctcgaaaggcacttacatccgt
actatcgttgatgacctaggtgaaatgcttggttgtggtgcacacgtgaccatgcttcgt
cgtacgggtgttgctaagtacccatacgaaaaaatggtgacgctagaacaacttaatgag
ttacttgagcaagcacatcgcgatgaagtagcaccgaaagagttgcttgatccactgctg
ttgccaatggacactgccgttgaagatttgcctgaggtaaacctaaaagctgagctaacc
aacttagtacaacacggtatgccagtgcaggtactgggtgcgccagagggtacgccaatt
cgtatgacttctggtgaagataagctgtttattggcgttgctgaagtgaacgacgatgga
aaagtggcaccaaaacgtttggtggttttccgcgacgaagagtaa
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