Vibrio campbellii ATCC BAA-1116: VIBHAR_03521
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Entry
VIBHAR_03521 CDS
T00589
Name
(GenBank) hypothetical protein
KO
K06176
tRNA pseudouridine13 synthase [EC:
5.4.99.27
]
Organism
vha
Vibrio campbellii ATCC BAA-1116
Brite
KEGG Orthology (KO) [BR:
vha00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vha03016
]
VIBHAR_03521
Enzymes [BR:
vha01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.27 tRNA pseudouridine13 synthase
VIBHAR_03521
Transfer RNA biogenesis [BR:
vha03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
VIBHAR_03521
Prokaryotic type
VIBHAR_03521
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruD
Motif
Other DBs
NCBI-ProteinID:
ABU72457
UniProt:
A7MTT9
LinkDB
All DBs
Position
I:complement(3570154..3571197)
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AA seq
347 aa
AA seq
DB search
MSDILSSLAYLTGKPVASAKIKAQPEHFQVREDLGFAFTGEGEHLLVRIRKTGENTSFVA
NELAKACGVKSKDVSWAGLKDRHAVTEQWLSVHLPKGETPDFSAFLAQHPSIEILATDRH
NKKLRPGDLVGNEFVVTLSEVTDVADVEQRLEKVKQVGVPNYFGSQRFGNDGNNLEEASR
WGRENVRTRNQNKRSMYLSAARSWIFNRIVSARLENGVFDKFIDGDVAQTASGTQLVDAS
NMAALQAQFAQGEVAITAALAGDNALPTQADALTLEQPFLDEEPDLMALIRGNRMRHDRR
DIALKPQDLAWTVDGNNITMTFSLDAGSFATSIVRELVIEEKVEREY
NT seq
1044 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacattttatcttcattggcttacctaacaggtaagccagttgcatctgcaaaa
atcaaagcgcaaccagagcactttcaggttcgcgaagatttaggttttgcctttacaggt
gagggcgagcacttattggttcgtatccgtaaaacaggtgagaacaccagttttgttgct
aacgaactagcaaaagcctgtggtgttaagtcgaaagacgttagctgggcgggccttaaa
gaccgtcatgctgtgactgaacaatggctaagtgtgcatttaccaaaaggtgaaacgcca
gacttttcagcatttttggcgcaacacccaagcatagaaatccttgcaacggatcgtcac
aataaaaaactgcgtcctggagacctagtagggaacgagttcgtggtgactttgtctgaa
gtgacagatgtagcggatgttgagcaacgccttgaaaaagtgaaacaagtgggtgtgccg
aactactttggtagtcagcgttttggtaacgatggcaacaaccttgaagaagcaagtcga
tgggggcgcgagaacgttcgtacccgtaatcaaaacaagcgcagtatgtacctgtcagca
gctcgttcatggatcttcaaccgcattgtttccgctcgcctggagaatggtgtgtttgac
aagttcatcgatggtgatgtggcacagacagcttctggtactcagttagttgacgcaagc
aacatggctgctctacaagcacaatttgctcaaggcgaagtggcgattactgctgcactg
gcgggtgataacgcgctaccaactcaagcggatgcgctaaccttagaacaaccgttttta
gatgaagaaccagatttgatggcactgattcgtggtaaccgcatgcgtcacgaccgccgc
gatatcgcactcaagccacaagacctagcttggacggtcgatggcaataacatcacgatg
acattctcgctggatgcgggttcatttgcgacctcaatcgtgcgtgagttggtcatcgaa
gaaaaggtagaaagagaatattaa
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