Vibrio campbellii ATCC BAA-1116: VIBHAR_03681
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Entry
VIBHAR_03681 CDS
T00589
Name
(GenBank) hypothetical protein
KO
K08301
ribonuclease G [EC:3.1.26.-]
Organism
vha
Vibrio campbellii ATCC BAA-1116
Brite
KEGG Orthology (KO) [BR:
vha00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vha03019
]
VIBHAR_03681
03009 Ribosome biogenesis [BR:
vha03009
]
VIBHAR_03681
Messenger RNA biogenesis [BR:
vha03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
VIBHAR_03681
Ribosome biogenesis [BR:
vha03009
]
Prokaryotic type
rRNA processing factors
VIBHAR_03681
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ABU72595
UniProt:
A7MS99
LinkDB
All DBs
Position
I:complement(3716287..3717756)
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AA seq
489 aa
AA seq
DB search
MSAELLLNVTPSETRVAMIEGGVLQEVHIERESRRGIVGNIYKGKVSRVLPGMQAAFIDI
GLDKAAFLHASDIVPHTECVAENEKQQFQVRDISELVRQGQDIVVQVVKDPLGTKGARLT
TDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVNHYCDEHGGFIIRTAAEGADEK
ELSQDAAFLKRLWQKVMERRAKYKTRSTLYGELGLAQRILRDFVGTELDKIMVDSRLEYE
NLKEFTSEYVPELTDKLELYEGDKPIFDMYDTENEIQRSLERKVELKSGGYLIIDQTEAM
TTVDINTGAFVGRRNLEETIFNTNVEATQAIARQLRLRNLGGIIIIDFIDMLSDEHRKRV
LTSLEAALSKDRVKTNINGFTQLGLVEMTRKRTRESIEHILCSSCPTCEGRGSVKTVETV
CYEILREITRVNRAYDADNFVVYASPYVAETLLGDESHALAELEVFIGKQVRIQAEPLYI
QEQFDVVMM
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atgagtgcagaattgctgcttaacgtgaccccgagtgagactcgtgtggccatgattgaa
ggtggagtactacaagaagttcatatagaacgtgaatcgcgccgcggcattgttggcaat
atttacaaaggcaaagtgagccgagtattgccgggcatgcaagcggcgtttatcgatatt
ggtctagataaagcggcattcttacacgcgtcagacatcgttccgcacaccgaatgtgtg
gcagagaacgaaaagcaacagttccaagtgcgtgatatttctgaattggttcgccaagga
caggatattgttgtacaggtggttaaagacccgctaggtaccaagggcgctcgtctgacg
actgatatcactcttccttcgcgttatcttgtttttatgcccggagcgagccatgttggt
gtttctcagcgtattgaaagcgaaagtgagcgtgagcgtctgaagaaagtcgtcaatcac
tactgtgatgagcacggtggctttatcattcgtactgcggcagaaggtgctgatgagaaa
gagctttctcaagatgcggcatttttgaagcgtttatggcagaaggtgatggagcgtcgt
gcgaagtataaaactcgctcgaccttgtacggtgagctaggcttagcccagcgcattcta
cgtgattttgttggcactgaattggacaaaatcatggtcgactctcgcctagagtatgag
aacctaaaagagtttacctctgagtacgtgcctgagctaacagacaagcttgagctatac
gaaggtgacaagccgatcttcgacatgtacgacacagagaacgaaatccaacgttctttg
gagcgtaaggttgagcttaaatctggtggctacctaatcatagatcaaactgaagcgatg
acaacggtcgacatcaataccggtgcgtttgttggtcgtcgtaaccttgaagaaaccatc
ttcaacaccaacgtcgaagcgactcaagcgattgcccgtcagctgcgcctacgtaactta
ggcggtatcattattatcgactttatcgatatgttatcggacgagcatcgtaagcgtgta
ctaacttcgcttgaggccgccttgtcaaaagaccgcgtaaaaaccaacattaacggcttt
actcagctaggcttagttgagatgactcgtaagcgtacgcgcgaaagcattgaacatatc
ttatgttctagctgtcctacttgtgaaggtcgcggcagcgtgaagactgttgagaccgtg
tgctacgagatcctacgtgaaatcactcgagtgaatcgtgcgtatgatgcagacaacttc
gttgtgtacgcatcgccatacgtagctgaaacactattgggtgatgaatcccatgcacta
gctgaactcgaagtatttattggtaagcaagttcgtattcaagctgaacccctgtacatt
caggagcagtttgacgtcgtcatgatgtaa
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