Virgibacillus halodenitrificans: BME96_02310
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Entry
BME96_02310 CDS
T04548
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
vhl
Virgibacillus halodenitrificans
Pathway
vhl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vhl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BME96_02310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vhl03019
]
BME96_02310
03009 Ribosome biogenesis [BR:
vhl03009
]
BME96_02310
Enzymes [BR:
vhl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BME96_02310
Messenger RNA biogenesis [BR:
vhl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BME96_02310
Ribosome biogenesis [BR:
vhl03009
]
Prokaryotic type
rRNA helicases
BME96_02310
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
Ferritin_2
Motif
Other DBs
NCBI-ProteinID:
APC47097
UniProt:
A0AAC9IXP2
LinkDB
All DBs
Position
437909..439381
Genome browser
AA seq
490 aa
AA seq
DB search
MTAFKELGVSAPIMKALEKMGFEEATPIQSETIPLAMQGNDVIGQAQTGTGKTAAFGIPM
IEKIDPKQRKIQGLVVAPTRELAIQVAEEVNRLAKFKGIRALAVYGGQHMDRQIRALKDG
PQIVVATPGRLLDHMRRRTIKIDMVQTAILDEADEMLNMGFIDDIRDILKGIPEERQTLL
FSATMPKEIRDIATNLMKDPKEIKVKAKEMTVENIDQFFVEIPEKFKFDTLNNHLDINSP
ELAIVFSRTKKRVDEITEGLQARGYRAEGIHGDLTQGKRMSVLNKFKGGRVDVLVATDVA
ARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGEAISFITPREMAHLHLIEKTTK
SKMKRLMPPTNKDAQQGQQQVTVDKILSTIEKQDLKAYHETATELLEDNDSVTVIAAALK
LLTKERRDTPVKISSVAPISVKKAQNSRDNRRSNNKRFQGKRGQGGRNQGGRHQGGRNRK
GNFQKRRNND
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
gtgacagcatttaaagaactaggggtatcagccccaattatgaaagcactggaaaaaatg
ggatttgaggaagcaactccgatccaatcagagacaattccactagcaatgcaagggaat
gatgtgattggacaagcgcagactggaacaggaaaaacagctgcattcggtatcccaatg
attgaaaaaattgatccaaagcaaagaaagattcaaggtttggttgtagcgccgactcgc
gaattagcaattcaggttgcagaagaagtaaaccgccttgctaagttcaaagggatcaga
gcattggcagtttacggcggtcaacatatggaccgacaaattcgcgcattaaaagatggc
ccgcaaatagttgtagcgactcctggtcgactacttgaccatatgcgcagaagaactata
aaaattgatatggtacaaacagctatattggatgaagcagatgaaatgcttaatatggga
ttcattgatgatatccgtgacattttaaaaggaattccggaagaaagacaaacattgctg
ttttcagcaacaatgccaaaagagattcgcgatattgctactaacttgatgaaggatccg
aaagagattaaagttaaagcaaaagaaatgactgtagaaaatattgatcagttcttcgtt
gaaattcctgaaaaatttaagttcgatacactaaacaatcatttggatataaattcacca
gaacttgcgattgtttttagtagaacaaagaagcgcgtagatgaaattacagaaggacta
caggcaagaggatatcgcgcagaaggaattcatggtgatttaacacaaggtaagcgtatg
tctgtactaaataaatttaaaggcggacgtgttgatgtacttgtagcgactgatgtggca
gcacgtggtttggatatctcaggcgttactcacgtttataattttgatatccctcaagac
cctgagagctacgtacaccgtattggtcgaacaggtagagctgggaagacaggtgaagct
atttcatttattacacctagagaaatggcacatcttcacttaattgaaaagacgactaaa
agcaaaatgaagcgtctcatgcctcctaccaataaggatgctcaacaaggtcaacagcaa
gtaactgtagacaagattttgtcaactattgaaaaacaggatttaaaagcctatcatgaa
actgcgactgaactattggaggataatgattctgttacggttatagctgctgcgctaaaa
ctacttacaaaggaacgcagggatacacctgttaaaatttcctctgtagcaccaattagc
gtgaaaaaagcacaaaactcaagagacaatcgtcgctcaaataataaacgtttccaagga
aaacgtgggcaaggtggacgtaaccaaggcggacgtcaccaaggtggaagaaaccgcaaa
ggaaattttcaaaagcgcagaaacaatgattaa
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