Virgibacillus halodenitrificans: BME96_04465
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Entry
BME96_04465 CDS
T04548
Name
(GenBank) helicase-exonuclease AddAB subunit AddB
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
vhl
Virgibacillus halodenitrificans
Brite
KEGG Orthology (KO) [BR:
vhl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vhl03400
]
BME96_04465
Enzymes [BR:
vhl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BME96_04465
DNA repair and recombination proteins [BR:
vhl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
BME96_04465
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ADDB_N
PDDEXK_1
UvrD_C
Motif
Other DBs
NCBI-ProteinID:
APC47467
UniProt:
A0AAC9NJH7
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All DBs
Position
883568..887062
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AA seq
1164 aa
AA seq
DB search
MGLRFLLGRAGTGKSGRTMDEIKEKLLDQPNGTSIFYIVPDQMTFQQESALFHDKDIVGS
IRAQVVSFSRLAWRILQETGGGTKQFISSVGVQMMLRKIIEEKTDDWRVFQKAMEKQGFL
TQLEKMITEFKRYNISPEALQSQMKEIEGYVHKESGEEALISKLDDLAYIYEKLMVALQD
KYIDSEDQLQLLADKISESSLLEDAEVYLDGFHRFTPNELVVVEALLKKCKSVTIALTVD
GLEKEASELDLFYQTVKTYHQIQQIAIENQIPLEETVQLDPANGRFSNRPYFAHLEQYFD
VRPAPQFDGETPIRIAEAVHPRAEVEGVAQEVIRLVREENYRFRDLAVFIRQTDTYHDLI
ATIFEDYDIPVFIDEKRTMLNHSLIEFIRSVLDIVEGNWRYDAIFRVLKTGFIPVTDKEY
PLTADAIDELENYVLEYGIRSRNRWLGDEEWVFQRFRGFDQATQTDTEKEIQKRINRYRK
QVVSALAPFDEDMRRVSTIRELCERTYLLLEELGVPNRLEQMRELFDERSEIEKGREQEQ
VWNAVIQLFDEMVEMAGEETMTLTTFRATLDAGFETLKFAHVPPSIDHVIVGTIDRSRIS
GIKCSFLLGVNEGVWPMKPSGDGMINEQERELLAGHGLRLAETSKRQLLDDWFYMYIAFT
SAKDKLWVSYPLSDEEGKSKMPSQLIKRVEDLFPICCEHLLLQDPDELVEADRFITTPTK
TRSALTAQLARNRKGYPVKPIWWHVLNWYITHHERYSTTYNVLQSLFYENKPINLDTETV
GKLYPKQVKASVSRLETYYRCSYQHFAKYSLGLDERKTYKLDAPDIGQLFHEALKTITEW
VQKEGRNFAQLTKNDTEGYARKAVTNLAPILQHQILHSSNRYKYIQQKLQEVIARAAYIL
SEQARQSNFSPVGLELGFGTDQKLPPLTLPLPNGYELMLRGRIDRIDQAINNESLFLRII
DYKSSSKGLNLLEVYYGLALQMLTYLDVVLTHSETWLGVKATPAGVLYFHVHNPMISGDQ
KLPEDKIEEEIFKKYKMQGLLLSDEDIVKMMDNSLESGTSTIVPAGVKKNGGFYSSSKIA
DEDTFTSLQTHIHQLMMQAGIDMTAGGVHLNPYQHKQQIACTYCPFHAVCQFDPMLEDNN
YRKLTEMKEETILEKIRVDEGEVK
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atgggacttcgatttttactggggcgcgccgggacaggaaaaagcggcagaacaatggat
gagattaaagagaagttattggatcagccaaatggcacctctattttctatattgttcca
gatcaaatgacatttcagcaggaatccgcccttttccacgataaggatattgtaggtagt
attcgcgcacaggtagtaagcttctccaggttggcatggagaatccttcaagaaacaggt
gggggaacgaaacagtttattagctctgttggcgtacaaatgatgctacgaaaaattatt
gaggaaaaaacggatgactggcgtgtttttcaaaaagcaatggaaaaacaaggatttctt
actcaactggaaaaaatgataacggaatttaaacgatataacattagtccggaagcactt
caaagtcaaatgaaagaaatagagggctatgtccacaaagaatcaggagaagaagcatta
attagtaagcttgatgatctagcatatatttacgaaaaattaatggttgctttacaagat
aaatatattgatagtgaagatcaattacaattattagcggataaaataagtgaatccagc
ttgcttgaggatgcggaggtttatttggacggctttcatcgttttaccccaaacgagtta
gtagtggtagaagccttattaaaaaaatgcaaatccgtcaccattgctcttacagtagat
ggattagaaaaagaggcttcagaactggatttattttatcagacggtgaagacgtaccat
caaatacaacaaattgctatagaaaatcagatcccgctggaagaaacagtacagttagat
ccggctaatggcagatttagtaatcgtccttactttgcccatttagagcaatattttgac
gtaaggcctgcacctcagtttgatggagagacaccaattcgcattgcggaagccgtacat
cctcgggcagaggtagaaggtgtagcacaggaggtaatccgtcttgttcgagaagagaat
taccgctttcgggaccttgctgtttttatcaggcaaacagatacataccacgatctgatt
gcaacgatatttgaagactatgatatacctgtgtttatagatgaaaaaagaacgatgctt
aatcattctttgatagaatttattagatcagtactggatattgtagaaggaaattggcga
tatgatgccattttccgtgtgttgaaaacaggattcatcccagtaacagacaaggaatat
ccgctaacagctgatgcaattgatgagttagaaaattatgtcctggaatatggtatacgc
tcgagaaatcgttggttaggtgatgaagagtgggtatttcaacgcttcaggggttttgat
caagcaacacaaacggatacagaaaaagagattcaaaaaagaattaataggtaccgtaag
caagtagtaagtgcattagccccatttgatgaagatatgcgaagagtgagtacgatccgg
gagctatgtgaacgcacatacttacttttggaggagttaggtgtaccaaatcggcttgag
caaatgcgtgaattgtttgatgagcgaagtgagatagaaaaaggaagagagcaagagcag
gtgtggaacgcggttattcaactatttgatgaaatggtggaaatggctggagaggaaacc
atgacactgacaacatttcgtgcaacattggatgccggtttcgaaacattgaaatttgct
cacgttccaccaagcatcgatcatgtcattgttggtacgattgatcgttcccgtataagc
ggaatcaaatgctccttcctccttggggttaacgaaggcgtttggcctatgaaaccatcg
ggtgatgggatgattaatgagcaggaaagagaattattggccggtcatggactacgttta
gctgaaaccagtaagcgccaattgcttgatgattggttttatatgtatatcgcatttact
tcagcaaaggacaagctttgggtaagttatccgttaagtgatgaggaaggaaagtcaaaa
atgccctctcaactgattaagcgggtggaggatcttttcccgatttgttgtgaacattta
ttactgcaggatccggatgaattagttgaagctgatcgatttataactactccgacgaaa
accagatccgcgttgaccgctcaattagctcgtaatagaaaaggttacccagtaaagccg
atttggtggcatgtattaaattggtatattacccatcatgagcgttatagtacaacttat
aatgtattgcaaagcttattttatgaaaataaaccaatcaacctggatacggagacagtg
gggaaattatatccaaagcaggtaaaggcaagtgtatcgagactggaaacctactatcgt
tgttcttatcagcattttgctaaatatagcctgggattggatgaaagaaagacgtataaa
ctggatgcgccggatattggtcagttgtttcatgaagcattaaaaacaataacggaatgg
gtgcaaaaggaaggaagaaactttgctcaactaaccaaaaacgatacggaaggctatgcc
cgtaaagctgtaacaaatttagcacctatattacagcaccagattttgcatagttccaac
agatacaagtatattcagcaaaaattgcaggaagttattgcaagagctgcctacattctt
agtgagcaagcaagacagagtaacttttcgcctgttggactggaacttggctttggtacg
gatcaaaaactacctcctttaactctcccgcttcccaacgggtatgaattgatgcttaga
gggcgaattgaccgtattgatcaggcgataaataatgaatctttatttttgaggattatt
gattataaatcaagctccaagggtttgaatttactcgaagtttattatggactggcatta
cagatgctaacatatttggatgtggtattgacacattctgagacatggcttggagtaaag
gctactccagctggtgtactctatttccatgttcataatccgatgatttccggtgatcaa
aaattacctgaagataaaatagaagaagagatttttaagaagtataaaatgcaaggtctt
ttattgtcagatgaagatatcgttaaaatgatggataacagcctggaatcgggcacgagc
acaattgttccagctggtgtgaaaaagaacggaggattttacagctcctctaaaatagca
gatgaagatacatttactagtctgcaaacacatattcatcaactgatgatgcaggcagga
attgatatgacagcaggtggcgttcacttaaatccatatcagcacaagcaacaaatagcg
tgtacttactgcccatttcatgcagtatgtcagtttgatccgatgcttgaggataataat
taccgaaaactgacagaaatgaaagaagaaacaatcctggaaaagatccgcgtagacgag
ggagaggtgaaataa
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