Virgibacillus halodenitrificans: BME96_07235
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Entry
BME96_07235 CDS
T04548
Name
(GenBank) 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
vhl
Virgibacillus halodenitrificans
Brite
KEGG Orthology (KO) [BR:
vhl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vhl03016
]
BME96_07235
Enzymes [BR:
vhl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
BME96_07235
Transfer RNA biogenesis [BR:
vhl03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
BME96_07235
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
AKAP7_NLS
HVSL
Motif
Other DBs
NCBI-ProteinID:
APC47976
UniProt:
A0AAC9IXM3
LinkDB
All DBs
Position
1392541..1393122
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AA seq
193 aa
AA seq
DB search
MASPHYFIAIPVPFSFQSLFSTWQKQLREHVSYKQWPHQEDLHITLKFLGPVADTKIQSV
TEMLKPIEEINAFSVNVGNLGSFGNQVNPRVLWAGVEVNKGLLELYNKVEEALSHVGFSK
ENRPYRPHITLAKKWTGVPFKTSIDELAEKFKEKYAFDVDHVVIYKIHPEKSPKYEEIAI
FKLKRGDLAGSIN
NT seq
582 nt
NT seq
+upstream
nt +downstream
nt
atggcctcaccacattattttatagctataccagtccctttcagctttcaaagtcttttt
tctacatggcaaaaacagttaagggaacacgtatcctataaacaatggcctcatcaggag
gatttgcacattactttaaagtttttgggcccagttgccgatactaagatacagtctgtt
acagaaatgttgaaaccaattgaagaaataaatgcattttcagtaaatgtaggaaacctg
ggaagctttggtaatcaagtaaacccgagggtcttatgggcaggtgtggaagtgaataaa
gggctattagagctctacaataaggttgaagaagctctttcacatgttggcttttccaaa
gaaaatagaccataccgtccacatattacgcttgctaaaaagtggactggagttccattc
aaaacaagcattgatgaactagctgaaaagtttaaggaaaagtatgcttttgatgttgat
catgtcgttatatacaaaatacatccagaaaaatcaccaaagtacgaagaaatcgctatt
tttaaattgaaaaggggtgaccttgctggctcaattaattaa
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