Virgibacillus halodenitrificans: BME96_07650
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Entry
BME96_07650 CDS
T04548
Name
(GenBank) DNA-formamidopyrimidine glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
vhl
Virgibacillus halodenitrificans
Pathway
vhl03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
vhl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
BME96_07650
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vhl03400
]
BME96_07650
Enzymes [BR:
vhl01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
BME96_07650
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
BME96_07650
DNA repair and recombination proteins [BR:
vhl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
BME96_07650
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Parvo_NS1
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
APC48055
UniProt:
A0AAC9NKM6
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All DBs
Position
1476955..1477782
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AA seq
275 aa
AA seq
DB search
MPELPEVETIRKTLKNLVLNKKIEKVKVYWPKIIKQPDDVEEFKHILSGQTIRDIKRKGK
FLLFQLDDYYLVSHLRMEGKYSVNKPIEPVKKHTHIVFYFEDGDELRYNDVRKFGTMHVY
PIGEELNEKPLNQLGPDPFEDAFTFDYFYSKLKKTDRTIKAALLDQSILAGLGNIYVDET
LFKAGIHPLKRSSKLTKKEIKAIQEAAIYTLAGAVKLGGTTIRSYVNGQGQMGMFQQELF
VYGQENKPCKTCGKPIVKMKVGGRGTHICPTCQKN
NT seq
828 nt
NT seq
+upstream
nt +downstream
nt
atgcctgagttgccagaagttgaaacaattagaaaaacactaaaaaacttagtactaaat
aaaaagattgagaaagtaaaggtatattggcccaaaattattaagcagccagatgatgta
gaggagtttaagcatattctctctggtcagaccattcgtgatataaaaagaaaagggaag
tttctattatttcaattggatgattactatttagtttcccatttaagaatggaaggaaaa
tatagtgtaaacaaaccgattgagccagtaaaaaagcacacacatatcgtcttttatttt
gaggatggtgacgagctgagatataatgatgtgcgtaaattcggcacaatgcatgtgtat
cctattggagaagaattaaatgagaaaccgctaaaccaattgggccctgacccatttgaa
gatgcttttacgtttgactacttttattccaagctgaaaaagactgatcgaacgataaaa
gcagcattgctggatcagtcaatactcgctggtttgggtaatatttatgtggatgaaaca
ttatttaaagcaggtattcatcctttaaagcgttcaagtaaattaactaagaaagaaata
aaggcgatacaggaagctgcaatttatacgctcgcaggagctgttaaactaggtggtaca
acaattcgttcctatgtaaatgggcaggggcagatggggatgtttcaacaagagctcttt
gtatacgggcaggaaaataaaccatgtaaaacatgtggcaagccaattgtgaaaatgaaa
gtaggcggcagaggcacacacatttgccctacatgtcaaaaaaattag
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