Virgibacillus halodenitrificans: BME96_08650
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Entry
BME96_08650 CDS
T04548
Name
(GenBank) DEAD/DEAH box helicase
KO
K18692
ATP-dependent RNA helicase CshB [EC:
5.6.2.7
]
Organism
vhl
Virgibacillus halodenitrificans
Brite
KEGG Orthology (KO) [BR:
vhl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vhl03019
]
BME96_08650
03009 Ribosome biogenesis [BR:
vhl03009
]
BME96_08650
Enzymes [BR:
vhl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BME96_08650
Messenger RNA biogenesis [BR:
vhl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BME96_08650
Ribosome biogenesis [BR:
vhl03009
]
Prokaryotic type
rRNA helicases
BME96_08650
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
P-loop_SecA
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
APC48240
UniProt:
A0AAC9IZX5
LinkDB
All DBs
Position
1680524..1681837
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AA seq
437 aa
AA seq
DB search
METTSFQDFSFHPVMNDIVKRLNFHEPTPIQQKVIPPILEGQSVIGQSRTGSGKTHAFLL
PLINKIDANKREVQFVITAPTRELATQLFDEVKKVIHYAGRDQQWNAKLLVGGTDKQKMM
EKLKEPPHIVVGTPGRILDMVKEDALSIYTAKSFVIDEADLMLDLGFINEVDQLLVRADQ
QIQLLVFSATIPQKLQHFLKKYLDHPVHIKMEDHFSPETMEHLLIDMKHREEAEIIYEIS
KTIQPYLAIIFTNGKELANQLAASLQDRGIDVGLIHGGLAPRERKRVLKEIQGLRYQYIV
ATDLAARGIDIKGVSHVINAQIPKEEEFYIHRVGRTARAGMEGTAISLFRENDLKLISKL
EQKGLEFTYVDVRNGEWKDAKPWNQRALRKTTATDIDKEAWKRVTKAKKVKPGYKKKMKK
QQASIKKQLSKKNKFKK
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atggaaacgactagttttcaagatttttcatttcacccagttatgaatgatatagttaaa
agattaaactttcacgaaccaactccaattcaacaaaaagtaataccacccattttggaa
ggacaaagcgtgataggtcaatcgcgtactggttcggggaaaacccatgcatttttgtta
ccattaattaacaaaatagatgcaaataagcgggaagtacaatttgtaataactgctcct
acacgtgaattagcaacgcaattatttgatgaagtgaaaaaagttatccattatgcaggc
agagatcaacaatggaatgcaaaattattagtaggtggtactgataaacagaaaatgatg
gaaaaattaaaagaacccccgcacattgtagtgggtactccaggccgcattctggatatg
gtgaaagaggatgctctttctatatatactgctaaatccttcgtaattgatgaagcagat
ctaatgctggatttaggttttatcaatgaagtagatcagcttttggttcgagcagatcaa
caaatacaattgttagttttttctgcaactattccacaaaaattgcaacactttctaaaa
aaatatttagatcaccctgtccatattaaaatggaggatcacttttctccagagacaatg
gaacatctactaattgatatgaagcatcgcgaagaggcggaaattatttatgaaatttca
aagacgatccagccatacttagctattatctttactaatggaaaagagttggcaaatcag
ttagcagcgtccttgcaagataggggaatagatgttgggctaatccatggcgggcttgct
ccaagagaaagaaaacgggtcttaaaggaaattcaaggattacgttatcaatatatcgtt
gcaactgacttagcagctagaggtattgatattaagggagttagccatgtcataaacgct
caaattcctaaagaagaagagttctatatccatagggtcgggagaacagcccgtgcagga
atggaaggtactgcaattagtttattcagagaaaatgatcttaaattaatatctaaatta
gaacaaaaaggtttggaattcacatatgttgatgttcgcaacggggaatggaaggatgct
aaaccatggaaccaacgtgcacttcgcaaaactacagcaaccgatattgacaaagaagct
tggaaacgtgttaccaaagcaaaaaaggtgaagccaggatataaaaagaaaatgaaaaaa
caacaggcttccataaaaaagcaattaagcaaaaaaaataagttcaaaaagtaa
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