Virgibacillus halodenitrificans: BME96_10390
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Entry
BME96_10390 CDS
T04548
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
vhl
Virgibacillus halodenitrificans
Pathway
vhl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vhl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BME96_10390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vhl03019
]
BME96_10390
Messenger RNA biogenesis [BR:
vhl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BME96_10390
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KhpA-B_KH
KH_2
Exonuc_VII_L
DUF3450
Motif
Other DBs
NCBI-ProteinID:
APC48560
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Position
complement(1999655..2001220)
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AA seq
521 aa
AA seq
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MDNPLIISILLALFLIVGIVVGYLIRKSIAEAKISSAETLAKQIVDEAHRNADAAKKEAL
LEAKDENHRLRQQTEEELRDRRNEVQKQENRLMQKEENLDRKSETLDKRELLLEKKEQSL
TEKQQQIEEMESKVETTLQEQQTELERISGYTTDQARQVILERIEKEVAHESALMIKEAE
NRAKEEADKKAKNILSLALQRCAADHVAETTVSVVNLPNDEMKGRIIGREGRNIRTLETL
TGIDLIIDDTPEAVILSGFDPIRRETARMALEKLVQDGRIHPARIEEMVDKARREVDEYI
REIGEETTFEVGVHGLHPDLIKILGRLKYRTSYGQNVLKHSTEVAYLAGLLAAELGEDVT
LARRAGLLHDIGKAIDHEVEGSHVEIGKELAMKYKEHEVVINSIASHHGDEEPTSIISVL
VAAADALSAARPGARSETLENYIKRLEKLEEISESFAGVEKSFAIQAGREIRIMVKPDEI
DDIESVRIARDIRKRIEGELDYPGHIKVTVIRETRSVEYAK
NT seq
1566 nt
NT seq
+upstream
nt +downstream
nt
atggacaatcctttaatcatctccattttgcttgctctattcctaatcgtcggtattgtt
gttggttatctgattcgtaaatctattgcggaagctaaaatttctagtgcagagacgtta
gctaaacaaatagtagatgaggcacaccgaaatgcagatgccgctaaaaaagaggcactt
cttgaggcgaaggatgaaaatcacagacttcgtcagcagacagaagaggaattgcgtgac
cgccgaaacgaagttcaaaagcaagaaaatcgtctgatgcaaaaagaagaaaatctggac
agaaaaagtgaaacactggacaagcgtgagctcttgttagagaagaaagaacaatcacta
acagaaaaacaacaacaaattgaagaaatggaaagcaaagtggaaactacattacaagag
cagcaaacggagcttgagcgcatttcaggatatacaactgaccaggctagacaagttatt
ttagagcggattgaaaaagaagtagctcatgaatcggctttaatgattaaagaagcagaa
aaccgtgcaaaagaagaagctgataaaaaggctaaaaatattctttcgttggcactccaa
cgttgtgctgcagatcatgttgcagaaacaactgtttcagttgttaacttgccaaatgat
gaaatgaaaggacgtattattggccgtgaaggaagaaatatacgaaccttggaaacactg
acaggtattgatttaatcatcgatgatacaccagaggcagtgattttatccggttttgat
cctattcgaagagaaacagctcgtatggctttagagaaacttgttcaagacggcagaatc
catcctgctcgtattgaggagatggtagataaagcacgtcgtgaagtggatgagtatata
cgtgaaataggggaagagacaacttttgaagtaggagtacacggtctgcatccggatcta
ataaaaattctcggtcgtctaaaatatcggactagctatggacaaaatgtattgaagcac
tctacagaggttgcatatcttgctgggctgcttgctgctgaattaggtgaagatgttacc
ttagcaagaagagccggattactacatgatattggtaaagcaattgatcatgaagtggaa
ggtagtcatgtggagatcggtaaagagcttgcaatgaaatataaggagcacgaagtagtc
attaattcaattgcttctcaccatggggacgaggaacctacttccattatctctgtacta
gttgctgctgctgatgcattatctgcagcaagaccaggtgcacgaagtgaaacattagaa
aactatatcaaacgtttagagaaactggaagaaatttctgaatcatttgccggggttgag
aaatcattcgcaattcaagcaggtagagaaatccgaattatggttaaacctgatgaaatt
gatgacattgaatctgttcgaattgcccgagatatacgaaagcgaatcgagggagagctt
gattatcccggtcatataaaagttactgttattcgagaaacgagatcagtagagtatgca
aaataa
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