Virgibacillus halodenitrificans: BME96_10815
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Entry
BME96_10815 CDS
T04548
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
vhl
Virgibacillus halodenitrificans
Brite
KEGG Orthology (KO) [BR:
vhl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vhl03032
]
BME96_10815
03400 DNA repair and recombination proteins [BR:
vhl03400
]
BME96_10815
Enzymes [BR:
vhl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
BME96_10815
DNA replication proteins [BR:
vhl03032
]
Prokaryotic type
DNA Topoisomerases
BME96_10815
DNA repair and recombination proteins [BR:
vhl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
BME96_10815
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Toprim_4
Zn_ribbon_RPB9
Toprim_2
HypA
Motif
Other DBs
NCBI-ProteinID:
APC48644
UniProt:
A0AAC9J306
LinkDB
All DBs
Position
complement(2080628..2082706)
Genome browser
AA seq
692 aa
AA seq
DB search
MSDYLVIVESPAKAKTIERYLGEKYKVKASMGHVRDLPKSQMGVDIEDQFKPKYITIRGK
GDVLKDLRAAAKKAKKIYLAADPDREGEAIAWHLAHILNVDEKSECRVVFNEITKDAIKE
SFKHPRTIDTDLVDAQQARRILDRLVGYNISPLLWKKVKKGLSAGRVQSVALKMIIDREK
EIENFKPEEYWSIEGLFEKDKESFEGSFYGIEGKKQALKTEEYVKKIITGLDSKRFSIDK
VNKRERKRNPAKPFTTSSLQQEAARKLNFKAKKTMMVAQQLYEGIDLGKKAGGITGLITY
MRTDSTRISATAVQEAKGYIEDSYGKDYLGNLKQAKQKEGAQDAHEAIRPTSVLRDPKTM
KAILSRDQLRLYKLIWERFLASQMAPAILDTMTVHLINNGIEFRATGSKIKFKGFMKVYV
EGNDDQKKEDDKYLPDLKEGMEVNAKEINPNQHFTQPPPRYTEARLVRTMEELGIGRPST
YAPTLDTIQRRGYVTIDNKRFIPTELGTIVLELVDEFFPEIIDAAFTAKMEGDLDAIEEG
KTEWVKIIDEFYQDFEKRLEIAEKEMEKVEIRDEPAGIDCENCGHEMVYKMGRYGKFLAC
SNFPECRNTKPILKEIGVTCPKCKKGNVVERKTKKRRVFYGCDRYPECDFISWDKPISRP
CPKCDALLVEKKSKKETQIQCTNCEYKEKPQT
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
atgtcagattatctagtaatcgtagaatcaccagcaaaagctaaaacaattgaacgatat
ttaggggaaaaatataaagtaaaagcatccatgggccatgtccgtgatcttccaaaaagt
caaatgggtgttgatatagaggatcaatttaaaccaaagtacattactatacggggaaaa
ggtgatgtattaaaagatttacgggctgcagccaaaaaggcaaagaaaatatatcttgca
gctgacccggatagagaaggagaggccattgcttggcatctcgcacatatattaaatgta
gatgaaaaatcagaatgtcgggttgtatttaatgaaatcaccaaagatgcaattaaagag
tcttttaaacatccacgtacgatagacacagatttagtagatgcacagcaggcaagaaga
attcttgaccgtttagtgggttacaacataagtccactactatggaagaaggtaaagaaa
ggcctaagtgctggtcgtgtccaatctgtagcattaaaaatgattatcgatcgggaaaaa
gagatcgaaaactttaaacctgaagaatattggtccattgaaggtttattcgaaaaggat
aaagaaagcttcgaaggttctttttatggtatcgaagggaaaaagcaagcacttaaaaca
gaagaatatgtcaagaaaattattactggattggatagtaaaagatttagtatcgataaa
gtaaataaaagagaaagaaaacgtaatcctgcaaaaccatttacaacatcctctttacaa
caggaagctgctcgtaaactaaatttcaaagctaaaaaaacaatgatggttgctcagcag
ttgtatgaaggaatagatttgggaaagaaagccggcgggataacaggtcttataacatac
atgagaacagattctaccagaatttcagctacagctgtacaagaagcaaaagggtatatt
gaagattcttatgggaaagattacctggggaatttaaagcaagcaaaacagaaggaaggc
gcccaggatgcgcatgaagctattcgaccaacttcagttttacgggaccctaaaacaatg
aaagcaattctctcaagggatcaattgcgtttatataaattaatatgggaaagattttta
gcgagtcaaatggcaccagcaatactagacactatgacagtccatttaataaacaatgga
atcgagtttagagctactggatctaaaatcaaatttaaagggtttatgaaagtctatgtt
gaaggcaatgatgaccagaaaaaagaggacgataaatatttgccagatttaaaagaaggt
atggaagtaaacgccaaagaaataaatccaaatcaacattttacacagccacctccaaga
tatacagaagcaagattagtacgtaccatggaagaattaggaattggcagaccttcaacg
tatgcaccaaccttagataccattcaacgaagaggttatgttactattgataataaacgg
tttatcccaactgaattagggaccattgtccttgaactagttgacgaatttttccccgag
attattgatgcagcctttacagccaaaatggaaggcgatttggacgctattgaggaaggg
aaaacagaatgggtaaaaattattgatgaattttatcaggattttgaaaaaagactggaa
atagcagaaaaggaaatggaaaaagtagagattcgtgatgaaccagccggcattgactgt
gaaaattgcggacatgaaatggtttataaaatgggacgatatggaaagttcttagcttgt
tcaaatttcccggaatgccgaaacacgaagcctatacttaaagaaataggagtaacatgt
cccaagtgtaaaaaaggtaacgtggtcgaaaggaaaacaaaaaaacggagagttttctat
ggttgtgatcgttatcctgaatgcgattttatttcgtgggataagccaatatcaagacct
tgtccaaagtgtgacgcattgttagtagagaagaagagcaaaaaagaaacacaaatccaa
tgtacaaattgcgaatacaaagaaaagcctcaaacctaa
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