Virgibacillus halodenitrificans: BME96_13120
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Entry
BME96_13120 CDS
T04548
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
vhl
Virgibacillus halodenitrificans
Pathway
vhl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vhl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BME96_13120
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vhl03019
]
BME96_13120
03016 Transfer RNA biogenesis [BR:
vhl03016
]
BME96_13120
Enzymes [BR:
vhl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
BME96_13120
Messenger RNA biogenesis [BR:
vhl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BME96_13120
Transfer RNA biogenesis [BR:
vhl03016
]
Prokaryotic type
tRNA degradation factors
BME96_13120
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_RNR_1st
OB_Dis3
OB_HELZ2
RNase_II_C_S1
TFIIE_beta
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
APC49077
UniProt:
A0AAC9J1X6
LinkDB
All DBs
Position
complement(2545904..2548066)
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AA seq
720 aa
AA seq
DB search
MLEKIRDYFKENGTKPLAVDELEEVLNIEDAVEFKELIKALNELEENGELVRTRKNRFGL
PEKMNLIRGKIQMHAKGFAFLIPDDPDQTDVYIHHSDLASAMNNDKVLVRLEKKDQDGNR
PEGTVIRILERATLQVVGTFEDNRAFGFVIADDKRIPNDIFIPKNMTNGAISGHKVIARI
TKYPEGRMSAEGEIIHILGHKNDPGIDIISIIHKNGIQVDFPDEVLEQAANTPEEISENE
IKERRDLRDEVIVTIDGADAKDLDDAVSVKKLDNGNYKLGVYIADVTYYVEEDSPIDKEA
FERGTSVYLVDRVIPMIPHRLSNGICSLNPQVDRLTLGCEMEITSSGEVVNHEIFQSVIK
TNARMTYKDVNKILVDKDEETREKYKDLVPFFELMEELATILNNKRMGRGAIDFDFKEAK
VLVDEKGKPEDVVLRERSVGERLIEEFMLAANETVAEHFHWMDVPFIHRIHEDPDAGKLQ
TFFEFLAGLGYIVKGTGNEIHPQALQKVIEEAKGKPEEMIISKLMLRSMKQAKYDAQSIG
HFGLATEFYTHFTSPIRRYPDLIVHRLIRTYLINKKMDKKTIAKWKEAMPEIARHTSERE
RTAVDAERETDDLKKAEFMQDKIGEEYVGVISSVTNFGLFVELENTIEGLIHVSYLTDDY
YHYDERRHAMIGERTAKVYRIGDEVKVKVAAVNTDERTIDFELVQAEKPKKKKKIKARKK
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atgttagaaaaaattcgtgattattttaaagaaaatggaacaaaaccgttagcagtagat
gagttagaagaagtattgaatattgaggatgccgtggaatttaaggaacttattaaggct
ctgaatgaattggaagagaatggtgagcttgtacgcacaagaaaaaaccgctttggttta
ccagaaaaaatgaatcttattaggggaaaaattcaaatgcatgcaaaagggtttgcattt
ttaatcccagatgacccggaccagaccgatgtatacatccatcattctgatttagcctca
gcaatgaacaatgataaagtattagttcgtcttgaaaagaaggatcaagacggcaaccgg
cccgaggggacggtcatccgtattctggaacgcgctacattgcaagtcgtcggaacattt
gaagataaccgtgcttttggctttgttattgcagatgataagcgaattcctaatgatatt
ttcataccaaaaaatatgactaatggagctatcagtggtcataaagttatcgcccgcatt
acaaaatatcctgaagggcgaatgagtgcagagggagaaattattcatattcttggtcac
aaaaacgaccccggtattgatataatctctattatccataaaaacggaattcaagtcgat
ttcccggatgaagtacttgaacaggcagcaaatactcctgaagaaatctcagagaatgaa
attaaagaacgcagagacttgcgggacgaagtaattgtaaccatcgatggagcagacgca
aaagatttggatgatgctgtatctgtgaaaaagttagataacggtaattacaaacttgga
gtttacattgctgatgttacttattatgtagaagaagatagtcctatagacaaagaagca
tttgagagagggacaagtgtttatcttgtagatcgggttataccaatgatacctcaccgt
ttgtccaatggcatttgctcgttaaatccacaagttgatcgattgactttaggctgtgaa
atggaaataacttcttcaggtgaggtcgttaatcatgagattttccaaagtgtcataaaa
actaatgcaagaatgacatataaggatgttaataaaattctcgtggacaaagatgaagaa
acgcgggaaaaatataaagatcttgttcctttctttgaattgatggaagagcttgcaact
attcttaataataaacggatgggaagaggggccatcgactttgattttaaggaagcgaaa
gtacttgttgatgaaaaaggtaagccggaagatgtagtcttacgtgaaagatctgttggt
gaacgactgattgaagaatttatgttagcggcaaatgaaacagttgctgaacattttcat
tggatggacgtaccgtttatacatcgcattcatgaggaccccgatgctggtaaattgcag
accttctttgagttccttgcaggtctcggatatatcgtgaagggcacggggaatgaaatt
cacccacaggcattgcaaaaggtaatcgaagaagcaaaaggtaaaccagaggaaatgatt
atttccaaattaatgctgcgttctatgaagcaagctaaatatgatgctcaaagcattggc
cattttggattagcaacagagttttatactcattttacctctccaattagaaggtatcca
gatttaattgtccatcgcttaatcaggacctatcttattaataaaaaaatggataagaaa
actattgcaaaatggaaagaggcaatgcccgagatcgctagacatacatcggagagagag
cgtacagcagtggatgctgagcgggaaacggacgacctgaaaaaagcagagtttatgcag
gataaaattggtgaagaatatgttggtgtgattagttcagtgacaaactttggtttattt
gtagagcttgaaaacacgatagaagggcttatccatgtcagctatttgactgatgactat
taccactacgatgaaagacgtcacgcgatgataggtgaaagaacagcaaaggtttatcgt
ataggtgatgaggttaaggtaaaggttgctgcagttaatacggatgaacgcacaatagat
tttgaattggttcaagccgaaaaaccaaaaaagaagaagaaaataaaagctagaaaaaaa
taa
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