Vibrio harveyi: AL538_03935
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Entry
AL538_03935 CDS
T04380
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
vhr
Vibrio harveyi
Pathway
vhr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vhr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AL538_03935
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vhr03019
]
AL538_03935
03009 Ribosome biogenesis [BR:
vhr03009
]
AL538_03935
Enzymes [BR:
vhr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
AL538_03935
Messenger RNA biogenesis [BR:
vhr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AL538_03935
Ribosome biogenesis [BR:
vhr03009
]
Prokaryotic type
rRNA processing factors
AL538_03935
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AMF96943
UniProt:
A0ABM5XU89
LinkDB
All DBs
Position
1:817059..820145
Genome browser
AA seq
1028 aa
AA seq
DB search
MKRMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPEGYTYQGRPSIKEVLTEGQEVIVQVEKEERGSKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDERTQLKAALSTLELPQGMGLIVRTAGVGKSAEEL
EWDLNVLLNHWGAIKGAADSNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNTIYERA
KEHIKLVRPDFISRVKKYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVEN
RLREAVRLDRARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCSGTGVVRDNESLAL
SVLRLIEEEALKDNTAQVLAVVPVPIASYLLNEKRRSVNHIERIQEVKITVVPNSDMETP
HFEVIRVREGEEFDLLSYLLPKKLEAMKEAEGKEPAEIDVKPKRIEEPVLKGFASPAQTA
PTPAATSKPAPAAKKKEAAPQEEKPGLFSRLFKAIGSFLFSGSEEVKEEPKKEEKKPNRD
NKRNKRDRNDRRRNNNQRDNREGRDNRDNKRRRKPREEQATEQNETQQQPNKQQNRNQKR
KPRAQQAEKAQEPKVNAKVAEKGLQLAAEARTGSEAKPEENKAKSNAKAEKVKERRQRRK
LNKSVRVKDQQAAEQAELEVPAQPVEAVEATVEKPVEAAAEAQQDNKAESKQRRNRRSPR
HLRASGQRRRRGRDRRPNPFRLRKGGVASPEMAMGKVMPRYIPKPAPKKEERVKEEVVVT
AAAVPAIQGGFACPEMAMGKVIIRREQPAVVEAPAVETKVQESVEAKVEAPVTEVPVVED
AVAEQAEATVVETTQVEPIVEAPVVEVTESAVETAPAQEPAVEVAEEAVTEVTAETPVET
QEPKAEVIKVAAKPRASAPMTKAPGPQELREITVTAAPFKAERYAPKGAGSQVATNRASA
VMTKPNFN
NT seq
3087 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaattaacgcaactcaaaaagaagagttgcgtgtcgctctggttgat
ggccagcgacttttcgatcttgatatcgagagtccgggtcatgaatctaaaaaagcgaat
atctacaaaggacgtatcacacgtatcgaaccaagcttagaagccgcatttgttgattac
ggtgctgagcgtcacggtttcctccctctcaaagaaattgcccgcgaatacttcccagaa
ggttacacttaccaaggtcgcccaagcattaaagaagtgctgactgaaggtcaagaagta
atcgtacaagtggaaaaagaagaacgtggtagcaagggcgcagctcttactactttcatc
tctcttgcgggtagctatcttgttcttatgcctaataaccctcgtgccggcggtatttct
cgtcgtatcgaaggtgacgagcgtactcaactaaaagcagcattaagcactttagaactg
cctcaaggcatgggtctgattgttcgtactgctggcgttggtaagagtgcagaagagctt
gagtgggacttgaacgtactacttaaccactggggtgcaattaaaggcgcagcagattct
aaccctgctcctttcctaatccaccaagaaagtaacgtaatcgttcgtgcaatccgtgac
tacctacgtcgtgatatcggtgaaatcctaatcgacagcaacaccatttatgagcgtgct
aaagagcacatcaaactggtacgtcctgatttcatcagccgcgttaagaaatacgaaggc
gaagtaccactattcagccactaccaaatcgaaagccaaattgaatcggctttccaacgt
gaagtgcgcttaccatcaggtggttctatcgtaatcgacccaacggaagctctaacatct
atcgatatcaactcggctcgcgcaaccaaaggcggcgatatcgaagaaacagcacttaac
actaacctagaagcagcagacgaaatcgctcgtcaattgcgtctacgtgaccttggtggt
ttggtggttatcgactttatcgatatgacaccggtgcgccaccagcgtgaagttgaaaac
cgtctgcgtgaagccgttcgtctagatcgtgctcgtgtacaaatcggtcgcatttcccgc
tttggtctgttggagatgtctcgtcagcgtttgagcccttctctagcagaagcaagccac
catatttgtcctcgttgtagcggtacaggtgttgttcgtgataacgaatctctagcactt
tctgtacttcgcctgatcgaagaagaagctctaaaagacaatacagcccaagtactagca
gtagtgcctgtgccgatcgcatcttaccttctgaacgaaaaacgtcgctcggtcaaccac
atcgaacgtattcaagaagtgaagattacggttgtgccaaactcagacatggaaacgcct
cacttcgaagttatccgtgttcgagaaggcgaagagtttgacctgctttcttacctactt
cctaagaaactggaagcaatgaaagaagcagaaggcaaagagccagcagagattgatgtc
aagcctaagcgtatcgaagagcctgtattaaaaggttttgcttcgccagcgcaaactgct
cctacgccagcagcaacttctaaacctgctccagcagcgaagaagaaagaagcagctccg
caagaagaaaaaccaggtctattcagccgtctgtttaaagcaattggtagtttcctattc
agtggttctgaagaagttaaagaagaacctaagaaagaagagaaaaaaccaaaccgcgat
aacaagcgcaacaagcgtgaccgcaacgatcgtcgtcgcaacaacaaccagcgtgataac
cgcgaaggtcgtgacaaccgcgataacaaacgtcgtcgtaaaccgcgtgaagaacaagcg
actgagcagaacgaaacacaacagcagcctaacaagcagcaaaaccgcaaccagaaacgt
aaacctagagctcaacaagctgaaaaagcacaagagcctaaagttaacgctaaagtcgcg
gaaaaaggtctgcagctagctgctgaagctcgtactggttcagaagcgaagccggaagaa
aataaagcgaagtcaaacgcaaaagcagagaaagtgaaagagcgccgtcaacgtcgcaag
ctaaacaaatctgtacgtgttaaagaccagcaagcggctgagcaagcagagctggaagta
ccagcacaaccagttgaagcagttgaagcaactgttgagaagccagttgaggcagcagca
gaagcgcaacaagacaacaaagcagagtctaaacagcgtcgtaaccgccgttcaccacgt
cacctacgtgcaagtggtcaacgtcgtcgtcgtggtcgcgatcgtcgtcctaacccattc
cgcctacgtaaaggtggtgtagcatctcctgagatggcaatgggtaaagtgatgccacgt
tacattccaaaaccagcgcctaagaaggaagagcgagtgaaggaagaagtagtggtaacg
gcagcagcagttcctgcaattcaaggtggttttgcttgccctgaaatggcgatgggtaaa
gtaatcatccgtcgtgaacaacctgcagttgttgaagcaccagcagttgaaacgaaagtt
caagaatctgtagaagcgaaagtagaagcgcctgttacggaagtgccagtggtagaggat
gccgttgctgagcaagctgaagctacagtagttgaaacaacgcaagtagagccaatcgtt
gaagcacctgttgtcgaagtgactgaatctgctgttgaaacagctccagctcaggaacca
gccgttgaagtggcagaagaagcggtaacagaagttacagcagaaacgccagtagaaacg
caagaacctaaagcagaagttatcaaagtagctgctaagccacgcgctagtgctccaatg
actaaagcgccaggtcctcaagagcttcgcgaaattacggttacagcggcaccgtttaaa
gctgagcgctacgcaccgaaaggcgcaggtagccaagtagcaacaaatcgtgcatcagca
gtaatgacaaaaccgaactttaactaa
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