Vibrio harveyi: AL538_04130
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Entry
AL538_04130 CDS
T04380
Name
(GenBank) excinuclease ABC subunit UvrB
KO
K03702
excinuclease ABC subunit B
Organism
vhr
Vibrio harveyi
Pathway
vhr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vhr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AL538_04130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vhr03400
]
AL538_04130
DNA repair and recombination proteins [BR:
vhr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AL538_04130
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AL538_04130
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
Helicase_C
UvrB
ResIII
UVR
DEAD
AAA_30
UB2H
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AMF96981
UniProt:
K5VI91
LinkDB
All DBs
Position
1:complement(862320..864350)
Genome browser
AA seq
676 aa
AA seq
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MSKVYELVSEYQPSGDQPTAIKQLLEGLDAGLAHQTLLGVTGSGKTFTLANVIAQAQRPA
ILLAPNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIE
QMRLSATKALLERKDAIIVASVSAIYGLGDPESYLQMMLHLRRGDVIDQRDMLRRLAELQ
YSRNDVAFERGQFRVRGEVIDIFPAESDQDAVRVEMFDDEVDCISVFDPLTGVVKQRDLP
RYTIYPKTHYVTPRERILDAIESIKDELEVRKKQLLDNNKLLEEQRISQRTQFDIEMMNE
LGFCSGIENYSRYLSGRAEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMYKGDRSRKE
TLVEFGFRLPSALDNRPMKFEEFEAISPQTIFVSATPGNYELEKSADEIADQVVRPTGLL
DPELEVRPVSTQVDDLLSEIRIRAAKDERVLVTTLTKRMAEDLTEYLHEHDVKVRYLHSD
IDTVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTI
GRAARNIKGKAILYADSITKSMKKAMDETDRRREKQKAYNAEMGIEPQALKRNIKDIMEL
GDITKSKRQRNTKQVPLSKVAEPSQTYEIMSPQQLEKEISRLEAAMYQHAQDLEFELAAQ
KRDEIEKLREQFIANS
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaagtttatgaactggtctctgagtatcaaccatctggtgatcagccaaccgct
atcaaacagttattggaagggttagacgcaggtcttgctcatcagacgctattgggtgta
actggctcaggtaaaacattcacgttggcaaatgtgattgcgcaagcgcagcgtcctgcc
atcctccttgcaccaaacaaaacgctggcagctcagctgtatggtgagatgaaagccttc
ttcccaaataatgccgtagagtacttcgtctcttactatgattactaccaacccgaagca
tacgttccaacgacggacacctttattgaaaaggatgcttcagttaacgctcatattgag
caaatgcgtttatcggccactaaagccttactagaacgcaaagatgcgatcatcgtagcg
tcggtatcggctatttatggtttgggtgatccggaatcgtatctgcaaatgatgttgcac
ctgcgccgtggagatgtgattgatcagcgtgatatgctgcgccgtcttgcagagttgcaa
tattctcgcaatgacgttgcattcgaacgcggtcagttccgcgttcgtggtgaagtgatt
gatatctttccggcagaatcagaccaagatgcggtccgtgtcgaaatgtttgatgatgaa
gtggattgcattagcgtattcgaccctctgactggagtggtgaaacagcgtgacttacca
cgttataccatctatccaaagactcactatgtgaccccgcgtgagcgtatccttgatgcg
attgaaagcatcaaagatgagcttgaagttcgcaagaagcagttgctagataacaacaag
cttctagaagagcaacgcatcagccaacgaactcagttcgatattgagatgatgaacgag
ctaggcttctgttcaggtatcgaaaactactcccgttacttaagtggtcgagcggagggt
gagccgcccccaacactattcgattacttacctcatgatggtttactgatcatcgacgaa
tcgcacgttacggttccacaaattggtgcgatgtataaaggtgaccgttcgcgtaaagag
acgttggtggagtttggcttccgtttaccttcagcattggataaccgtccgatgaagttt
gaagaatttgaggcgatttctccacagacgatatttgtatcagcgacaccaggtaactac
gagctggaaaaatcagccgatgagattgctgatcaggttgtacgcccaacgggtctgctc
gatccggaattggaagtacgtccggtatcgactcaagttgatgacttgttgtctgaaatt
cgcattcgagcggcgaaagatgagcgtgttctggtgacgacgttaaccaagcgtatggca
gaagacttgaccgaataccttcacgagcacgatgtgaaagttcgataccttcactcagat
atcgacaccgttgagcgtgtcgaaattattcgcgaccttcgtttaggtgagttcgacgtg
ttggtagggatcaacttgttgcgagaaggtctcgatatgcccgaagtatcgctggtggcg
atcttggatgcagataaagaaggcttcttgcgttcagagcgttcattgattcagaccatt
gggcgtgcagctcgtaacatcaaaggtaaagcgattctttacgcagattcgatcactaaa
tcgatgaagaaagcaatggacgaaacggaccgtcgccgtgagaagcaaaaggcatataac
gcagagatgggcattgaacctcaagccttgaagcgcaatatcaaagacattatggagctg
ggggatatcactaagtccaaacgtcaacggaacactaagcaagttccgttatcgaaagtg
gcagagccttcgcaaacctacgaaattatgtctccacagcagttggagaaagagatcagt
cgtctagaagcggcgatgtaccaacatgctcaagatctggaatttgaattagcagcgcaa
aagcgtgacgagattgagaagctacgcgagcagttcatcgctaacagttga
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integrated database retrieval system
