Vibrio harveyi: AL538_04905
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Entry
AL538_04905 CDS
T04380
Name
(GenBank) fatty acid oxidation complex subunit alpha FadJ
KO
K01782
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:
1.1.1.35
4.2.1.17
5.1.2.3
]
Organism
vhr
Vibrio harveyi
Pathway
vhr00071
Fatty acid degradation
vhr00280
Valine, leucine and isoleucine degradation
vhr00310
Lysine degradation
vhr00362
Benzoate degradation
vhr00380
Tryptophan metabolism
vhr00410
beta-Alanine metabolism
vhr00640
Propanoate metabolism
vhr00650
Butanoate metabolism
vhr00907
Pinene, camphor and geraniol degradation
vhr00930
Caprolactam degradation
vhr01100
Metabolic pathways
vhr01110
Biosynthesis of secondary metabolites
vhr01120
Microbial metabolism in diverse environments
vhr01200
Carbon metabolism
vhr01212
Fatty acid metabolism
Module
vhr_M00087
beta-Oxidation
Brite
KEGG Orthology (KO) [BR:
vhr00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00640 Propanoate metabolism
AL538_04905
00650 Butanoate metabolism
AL538_04905
09103 Lipid metabolism
00071 Fatty acid degradation
AL538_04905
09105 Amino acid metabolism
00280 Valine, leucine and isoleucine degradation
AL538_04905
00310 Lysine degradation
AL538_04905
00380 Tryptophan metabolism
AL538_04905
09106 Metabolism of other amino acids
00410 beta-Alanine metabolism
AL538_04905
09109 Metabolism of terpenoids and polyketides
00907 Pinene, camphor and geraniol degradation
AL538_04905
09111 Xenobiotics biodegradation and metabolism
00362 Benzoate degradation
AL538_04905
00930 Caprolactam degradation
AL538_04905
Enzymes [BR:
vhr01000
]
1. Oxidoreductases
1.1 Acting on the CH-OH group of donors
1.1.1 With NAD+ or NADP+ as acceptor
1.1.1.35 3-hydroxyacyl-CoA dehydrogenase
AL538_04905
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.17 enoyl-CoA hydratase
AL538_04905
5. Isomerases
5.1 Racemases and epimerases
5.1.2 Acting on hydroxy acids and derivatives
5.1.2.3 3-hydroxybutyryl-CoA epimerase
AL538_04905
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
3HCDH_N
ECH_1
3HCDH
ECH_2
LEM
Motif
Other DBs
NCBI-ProteinID:
AMF97125
LinkDB
All DBs
Position
1:complement(1033221..1035335)
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AA seq
704 aa
AA seq
DB search
MSEQKAFSLKIDEQNIAWLAIDVPNEKMNTLQAAFADEMKEIFAQLKDTSGVKGVIIHSL
KPDNFVAGADVRMLEACTTASEAEALAKQGQELFQQLSDLPYPVVAAIHGPCLGGGLELA
LACDYRVCTDSDKTRLGLPEVQLGLLPGSGGTQRLPRLIGLLPSLDLILTGKQLRAKKAK
KLGVVDACVPETILLDVAKQLIEKGKNKGNKKQSTKEKLMSGSGLGRKFVFEQAAKKTNE
KTRGNYPATVAILEVIQHGLEKGFAQGQELEAKRFGELVMSSESKALRSIFFATTEMKKE
NGAEAEPAAVNRVGVLGGGLMGAGISHVSVAKAKVPVRIKDVSNDGVLNALNYNYKLFEK
QRKRRIISKAGLQSKMLQLSGGVDFTSFNHIDVVIEAVFEDLDLKQTMVADIEANAKPET
IFATNTSSLPIHKIAEKAERPENIVGLHYFSPVEKMPLVEVIPHETTSEETISTVVALAK
KQGKTPIVVKDKAGFYVNRILAPYMNEAAHILLANEPIEQLDGALLDFGFPVGPITLLDE
VGVDIGAKIMPILVNELGERFKGPDVFETLLNDGRKGRKSGKGFYTYKGKKKEVDKSVYK
LLNLTPESKLSDNDIALRCVLPMLNEAVRCLDDGIIRSPRDGDIGAIFGIGFPPFLGGPF
RYMDQFGLKELVEKMNEFASKYGDRYAPCDGLLTRAGEGRNFYD
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atgagcgagcaaaaagcatttagtctaaagattgatgagcagaacattgcttggctagcc
atcgatgtgccaaatgagaaaatgaacacgctgcaagcggcgtttgcagatgagatgaaa
gagatcttcgctcaactaaaagacaccagcggcgtgaaaggggtgatcattcattcccta
aaaccagataactttgttgccggtgccgatgttcgtatgcttgaagcgtgcacaacggcg
agtgaagctgaagcattagctaagcaggggcaagagttattccagcaactgtctgatctg
ccttatccagttgttgctgcgattcacggtccatgtttaggcggtggtttagagcttgcg
ttagcgtgtgactaccgtgtgtgtaccgattccgataaaacgcgtcttggtttgcctgaa
gtgcaacttggtttgttgcctggttctggtggtactcagcgccttcctcgtctgattggt
ctgttgccttcgttagacctcatccttacaggtaaacaactgcgtgccaagaaagcgaaa
aaacttggcgttgtcgatgcgtgtgtaccagagacgattcttcttgatgtagctaagcag
cttatcgaaaaagggaagaacaaaggtaacaagaagcaatcgacaaaagagaagttgatg
tcgggcagtggtttaggtcgtaagtttgtgtttgagcaagccgcgaagaaaaccaatgag
aagacccgcggtaactatccagcaacggttgcgattctcgaagtcattcagcacggtctt
gaaaaaggctttgctcaaggtcaagagcttgaagcgaagcgctttggcgaattggtgatg
agctcggaatcgaaagcactgcgctctattttctttgctaccactgaaatgaagaaagaa
aacggtgcggaagccgagccagcagctgtcaacagagttggcgtgttgggtggtggtcta
atgggggcaggcatcagccatgtatctgttgcgaaggcgaaagtgccagtacgtattaaa
gacgtcagcaatgatggtgtgcttaacgcgttgaactacaactataagttgttcgaaaag
cagcgtaagcgccgtattatctctaaagcgggcctgcaatcgaaaatgctgcaactgtct
ggaggcgttgatttcacaagcttcaatcatattgatgtggttattgaagcggtgtttgaa
gatcttgaccttaaacagacgatggttgcggatattgaagcgaatgcaaaaccagagacc
atctttgcgactaacacgtcttcgctgccaattcacaaaattgcggaaaaagcagagcgt
ccagaaaacatcgtcggtctgcattacttcagcccggtggagaaaatgccactggtggaa
gtgattcctcatgaaactacgtcagaagagaccatttctaccgttgttgcgcttgcgaag
aagcaaggtaagacaccaatcgtcgtgaaagataaagcaggcttctatgtaaaccgcatt
cttgcgccttacatgaacgaagctgcgcacatcttgttggcaaatgagccgatcgaacag
cttgatggagcactgcttgacttcggtttcccagtaggtcctatcaccttgttagatgaa
gtcggtgtggatatcggtgctaagatcatgccgatcttggttaacgaattgggcgaacga
tttaaaggtccggacgtattcgaaacactactgaacgatggtcgtaaaggtcgtaagagt
ggtaaaggcttctacacctacaaaggtaagaagaaagaagtcgataagtccgtgtacaag
ctattgaacctgacgccagagtcgaagctgagcgataacgacattgcactgcgttgtgta
ctgccaatgctaaacgaagcggttcgctgtttagacgacggtattatccgttctccacgc
gatggtgatatcggtgcgatctttggtattggtttcccaccattcctaggtggtccattc
cgttacatggatcaattcggtttgaaagaactggttgagaaaatgaacgagttcgcatcg
aaatacggtgatcgttacgcgccatgtgatggcttactcactcgtgcgggtgaaggtcgt
aacttctacgattaa
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