Vibrio harveyi: AL538_05400
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Entry
AL538_05400 CDS
T04380
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
vhr
Vibrio harveyi
Pathway
vhr03030
DNA replication
vhr03430
Mismatch repair
vhr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vhr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AL538_05400
03430 Mismatch repair
AL538_05400
03440 Homologous recombination
AL538_05400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vhr03032
]
AL538_05400
03400 DNA repair and recombination proteins [BR:
vhr03400
]
AL538_05400
Enzymes [BR:
vhr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
AL538_05400
DNA replication proteins [BR:
vhr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
AL538_05400
DNA repair and recombination proteins [BR:
vhr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
AL538_05400
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
tRNA_anti_2
Imm64
Motif
Other DBs
NCBI-ProteinID:
AMF97222
LinkDB
All DBs
Position
1:complement(1130488..1133967)
Genome browser
AA seq
1159 aa
AA seq
DB search
MSDPKFIHLRIHSDFSMVDGINKVPPLVKKVAELGMPAMALTDFTNLCGLVKYYGTAHGS
GVKPIIGADFKMQSDEFGEELTQLTLLAADNEGYKNLTLLISKAYLRGHVQHQPVIDKAW
LAELSEGVIVLSGAKNGEIGKALLKGNRKVVESCVAFYQEYFPDRFYLELVRTGRSDEET
YLHFAIELAEETQLPVVATNEVVFISEDLFDAHEIRVAIHDGYTLEDPRRPKNYSPEQYL
RTEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPAFPTEGMEETDFLVMKSREGL
EERLEFLFPDEEERKQRRPEYDDRLQIELDVINQMGFPGYFLIVMEFIQWSKDNAIPVGP
GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE
MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPGMTLEKAFKAEPA
LPELYDADEEVKELIDMCRILEGCTRNAGKHAGGVVISPTTITDFAPIYADSEGHFPVTQ
FDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEREGKDPVRIESIPLDDAASFRLL
QNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGREA
ISYPDEKWQHESLKEILDPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM
AKQRATFEEGAIANGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKMHYPA
EFMAAVMTADMDNTEKVVGLVDECFRMKLTVLPPDINAGLYRFNVDENGAIVYGIGAIKG
VGEGPIDAILEARNKGGHFIDLFDFCARIDLKKVNKRVIEKLIYSGALDRLGPHRAALMA
SLNDAVKAASQHHQAEAFGQTDMFGVLTDAPEEVEHKYTQVPAWPEKVWLEGERETLGLY
LTGHPVNAYIKELNKYVSCRLKDATPTRRDQSVTVAGLVIAARVMTTKRGTRIGIMTLDD
RSGRMEVMLFSDALDRYAELLEKDKILVVSGQVSFDDFNGGLKMSAREVMDLGTAREKYA
RGLSVSIDAKQINDKFFEQFTRILEPHKAGTVPVNVYYQRADARARLTLGTEWRVTPSDT
LLDDLKQLLGKSQVELEFN
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atgtcagatcctaagttcattcaccttcgaatccacagtgatttctcgatggtggatggt
atcaacaaagttccaccgctcgttaagaaagtcgccgagctcggcatgcctgcaatggcg
ttgaccgatttcactaacctgtgtggtttggtgaaatactacggcactgcgcacggcagt
ggtgtgaagccaatcatcggcgcagatttcaaaatgcaatcggatgagtttggtgaggaa
ctgacgcaactgaccctattggctgcagataacgaaggttacaaaaacctgaccttattg
atctctaaagcctaccttcgtggtcacgtacaacaccaacctgtgattgataaagcttgg
ttagccgagctgtcagaaggtgtgatcgtattatctggcgcgaaaaatggtgaaattggt
aaagcgttacttaagggtaaccgcaaagtggtggaaagctgtgtagcgttctaccaagaa
tatttcccagaccgtttctatttagagttggttcgtactggtcgttccgacgaagagact
tacctgcactttgccatcgaattggcagaagaaacacaattgccagtagtcgctaccaac
gaagtagtctttatcagcgaagatttatttgacgctcatgaaattcgcgttgcgatccat
gacggttacacactagaagatccgcgccgtccaaagaattacagcccagaacaatacctg
cgtactgaagaggaaatgtgcgagctgtttgccgacattccggaagcactagaaaacagt
gtcgaaattgccaagcgctgtaacgtcacagtacgtcttggcgaatacttcctccctgct
ttcccaaccgagggtatggaagagactgatttcttggtcatgaagtctcgtgaaggtctg
gaagagcgtctagagttcctattcccagatgaggaagagcgcaagcaacgtcgtcctgaa
tacgatgatcgtctacaaatcgaactcgacgtaatcaaccaaatgggattcccaggttac
ttcttgatcgtaatggagttcattcaatggtcgaaagacaacgcgattccggtaggtccg
ggtcgtggttcgggtgctggttctttggtggcatacgcattaaaaatcaccgatcttgat
ccgttagaatatgaccttctattcgaacgtttcttgaacccagaacgtgtatccatgccc
gattttgacgtcgacttctgtatggataaacgtgaccaagtaattgatcacgtagcagaa
atgtacggtcgtgatgcggtatcacagatcatcaccttcggtaccatggcggcaaaagcg
gtaattcgcgacgtaggtcgtgtactggggcatccgtttggttttgtagaccgcatctcc
aaactggtaccgcctgatccgggtatgactctggagaaagcgtttaaagctgagccagca
ctgcctgagttgtatgatgctgacgaagaagttaaagaactgatcgatatgtgtcgcatc
ctagaaggttgtacacgtaacgccggtaagcacgcgggtggtgttgtaatctcaccaacc
acaattacagacttcgccccgatttatgctgactcggaaggtcacttcccagttactcag
ttcgataagaacgacgttgaaaccgctggtctggttaagtttgacttcttgggtctgcgt
accttaaccatcatcgactgggcgttgggtctgattaacccgcgtctagaacgtgaaggc
aaagatcctgttcgcatcgaatcgattccactggatgatgcggcgtcattccgtttgctg
caaaactcagaaaccactgcggtattccagcttgaatcgcgcggtatgaaagagctgatt
aaacgtctgcaaccggactgttttgaagacatcatcgcattggtggcactgttccgccca
gggccgcttcagtcgggcatggtagataactttatcgaccgtaagcacggtcgtgaggcg
atctcttatcctgatgaaaagtggcaacacgaatcgcttaaagagattctggatccgact
tacggcatcatcctgtatcaagaacaggtaatgcagatcgcacaggtactgtctggctac
acccttggtggtgcggacatgcttcgtcgtgcgatgggtaagaaaaaaccggaagagatg
gcgaaacagcgtgctaccttcgaagagggggcaattgccaacggtgtcgatggcgagttg
gcgatgaagatcttcgacttggtagagaagttcgcgggttacggctttaacaaatctcac
tcggcagcctacgcactagtttcgtaccaaacgctatggctgaagatgcactatccagcg
gaattcatggcagcggtaatgactgccgatatggataacactgagaaagtggttggctta
gttgacgaatgtttccgcatgaagctcaccgtgcttccgcctgacatcaatgccggcttg
taccgctttaacgtagacgagaatggcgcgattgtttatggcatcggcgcgattaaaggt
gtgggtgaaggtccaatcgatgcgatcttggaagcgcgcaacaaaggcggtcacttcatc
gacctatttgatttttgtgcgcgaatcgacctgaaaaaggtcaacaaacgtgtcatcgaa
aagctgatttactcaggcgcactcgatagactgggtccacaccgtgcggcactaatggca
tcgcttaatgacgcggtgaaagcggcaagccaacaccaccaagcggaagcatttggtcaa
acggatatgttcggtgtattgaccgatgctccggaagaggtggaacacaaatatactcag
gtgccagcatggccagagaaagtatggttagagggtgaacgtgagacgctcggtttatat
ttgaccgggcacccagttaacgcatacataaaggaactaaataagtacgttagttgtcga
ctaaaagacgcaaccccaactcgtcgtgatcaatccgtgacagtcgcgggtttggtgatt
gcagctcgtgtaatgacaaccaagcgcggtacacgaatcggtatcatgactctggacgac
cgaagtggtcgaatggaggtgatgttgttctcggatgcgcttgataggtatgcagaactt
ctcgaaaaagataaaattttggttgtttctggacaggtcagctttgatgacttcaacggt
ggccttaaaatgtcggcgcgtgaagttatggatctgggtactgcgcgtgagaaatatgca
cgtggtttgtcagtatcaattgatgctaaacagattaacgataaattctttgagcaattt
actcgtattttagaaccgcacaaagccggaaccgtacctgtcaatgtatactaccagcgt
gccgacgccagagcgcggttaacattgggcaccgaatggcgagtaacgccaagtgataca
ttactagacgatttaaaacagttacttggtaagagccaagtagaactcgaatttaactaa
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