Vibrio harveyi: AL538_05620
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Entry
AL538_05620 CDS
T04380
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
vhr
Vibrio harveyi
Pathway
vhr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vhr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AL538_05620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vhr03019
]
AL538_05620
03400 DNA repair and recombination proteins [BR:
vhr03400
]
AL538_05620
Enzymes [BR:
vhr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AL538_05620
Messenger RNA biogenesis [BR:
vhr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AL538_05620
DNA repair and recombination proteins [BR:
vhr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AL538_05620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
AAA_22
DDE_3
Motif
Other DBs
NCBI-ProteinID:
AMF97264
LinkDB
All DBs
Position
1:1176792..1178717
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AA seq
641 aa
AA seq
DB search
MQSASLQQTLQSVFGFDSLRPGQQPVIEAVMNGHSAAAIFPTGSGKSLCYQLPATQLPHL
TLVISPLLALMKDQLGFLQSKGIAAASIDSSQSREEAQQVMAGVKNGQIKILMISVERLK
NERFREFIRQIPLSLMVVDEAHCISEWGHNFRPDYLKLPQYQRELNIPQTLLLTATATPA
VIEDMQNKFNIAGENITVTGFYRPNLDISVVPCDEENKQTQLNDIIAATPKLPSIVYVTQ
QQTAEQVASSLIRLGINAHAYHAGMKSDIREKIQQQFMDSQIDCIVATIAFGMGVDKSDI
RRVIHFDLPKSIENYAQEIGRAGRDGQRSECILLGNTSGLTVLENFVYGDTPEPSSINYV
LEQIRENTPQWEVMALRLSRDSNIRQLPLKTLLVYLELAKVIEAKYSYFAEYRFKFLQEQ
SFILNQFQGERRQFVEAIFACSTKAKVWCQVDLEALWMNYQSERSRVVAALDYFHQNGWI
ELESKQLTDVYSVLPATQSQEAISQHLIELFQSKEHKDIERIHTMLSLFQSSDCLSHQLA
QYFADHDAPTQCGHCSVCRGQVASFPQPQQTQPELGHLSTWVDEFVQLSPTAISNAAVAR
FLCGISTPIITQLKASKLRGYGSMANVSFEQVLKQVELARA
NT seq
1926 nt
NT seq
+upstream
nt +downstream
nt
atgcaaagtgcctcgcttcagcaaacgcttcaatctgtgttcggatttgactcattaaga
cccggtcaacagccggtgattgaagcagtgatgaacggacactcggcagcagccatcttt
ccgactggttcggggaaatcactttgctaccaacttcctgcaacccagttaccacaccta
acactggtgatttcaccacttcttgctctgatgaaagatcagctcggtttcctgcaaagt
aaaggcatagctgcggcatctatcgacagtagccaaagccgagaagaagcgcagcaagtt
atggctggcgtgaagaatgggcagattaagattttgatgatttcggtagagcggctcaag
aacgaacgttttcgtgaattcattcgtcagattccgctctctttgatggtggtcgatgaa
gcacactgtatctcggaatggggtcataacttccgtcctgactaccttaaactgccacaa
taccaacgtgaactgaatatccctcaaacgctcttgctaaccgcaacggcaacgccagcg
gttatcgaggacatgcaaaacaagtttaatatcgctggtgagaacattacggttactggc
ttctatcgtcctaatctcgatatttctgtggtgccttgcgacgaagaaaataagcaaacg
caactgaatgacatcattgctgcaacacctaaactaccgagcatcgtgtatgtcactcag
caacagaccgctgagcaagttgccagctctcttatccgtttaggcatcaatgctcacgct
tatcatgcgggtatgaagagcgacattcgtgaaaaaattcaacaacagtttatggactcg
caaatcgactgcattgtcgcaacaatcgcatttgggatgggggtagataaatctgatatt
cgccgtgttattcacttcgatttaccaaaatctatcgaaaactacgcacaagaaattggg
cgcgccggacgtgatggacagcgttcggagtgtattcttttgggcaatacctccggctta
acggtattagagaactttgtttacggtgacacgccagagccaagctcaatcaattatgta
ctggagcaaattcgcgagaacactccgcagtgggaggtgatggcgttgcgattgtctcgc
gacagcaacattcgccaacttccgctaaaaaccttattagtttacctagagctggcaaaa
gtaattgaagccaaatacagttattttgcagaatatcgcttcaagtttttacaagaacaa
agtttcatcctcaatcagttccaaggcgagagacgtcagtttgttgaagccatttttgct
tgttcaaccaaagccaaagtatggtgccaagtggatttagaagcattatggatgaactat
cagtctgagcgcagccgtgtggttgcggcgctagattacttccaccaaaatggctggatt
gaattagaaagcaaacagcttacggatgtttactcggttctccctgccactcaaagccaa
gaagctatctctcagcatttaattgagttgttccaatccaaagaacacaaggacattgaa
cgaattcatactatgttgagtctgttccaatcgtcagactgtttaagtcaccaactggcg
caatactttgccgatcacgatgctccaactcaatgtggtcactgttcagtgtgtcgtgga
caagtcgcatcttttcctcaaccacaacaaacacaacctgaattgggacacctatcgact
tgggttgatgaatttgtccagctttcaccaacggcgattagcaatgcagctgtcgcacgc
ttcttatgtggaattagcacaccaattatcacgcaactgaaagcgagcaagttacgcggt
tatgggtcaatggcaaatgtctcttttgagcaagtactaaagcaggttgaattagcgcga
gcttag
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