Vibrio harveyi: AL538_05780
Help
Entry
AL538_05780 CDS
T04380
Name
(GenBank) exodeoxyribonuclease V subunit gamma
KO
K03583
exodeoxyribonuclease V gamma subunit [EC:
3.1.11.5
]
Organism
vhr
Vibrio harveyi
Pathway
vhr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vhr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
AL538_05780
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vhr03400
]
AL538_05780
Enzymes [BR:
vhr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
AL538_05780
DNA repair and recombination proteins [BR:
vhr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
AL538_05780
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_V_gamma
RecC_C
Motif
Other DBs
NCBI-ProteinID:
AMF99391
LinkDB
All DBs
Position
1:complement(1212165..1215641)
Genome browser
AA seq
1158 aa
AA seq
DB search
MFTVYHSNQVDVLKSLLVELIRINPLENPFEKEQILVQSPGMSQWLKMELAKEFGVAANL
EFPLPATFIWEMFTQVLADVPKRSAFNKEAMTWKLMHLLPGLLNEASFEPLARYLQDDSD
NSKLYQLAEKIADIFDGYLVYRPEWIASWEAGQTVPELEDEHPWQPILWQALYDHTVTLG
QSPYHRANLYEHFIDTLENFNGNFDHLPKRLFVFGISSLPPRYMDALKAIGEHIDVHLMF
TNPCRYYWGEVRDRKFLARLAAKHRQHVVWQEDHSEVQGETEQLKGSLEENVVDELHTDV
VGNSLLASMGKLGRDNMYLLSQLESHEIEAFVDVERDTLLHQLQADILNLEEHQDDEQID
SSQHKQVVSLGDKSLSLHSCHSPMREVEVLHDQLLAMFDADPTLKPRDIIVMVADINAYS
PAIQAVFGNAPGERFIPYSISDRTADQESPILAAFMQLVNLPNTRCLASELLELLETPAI
LKRFDLSEDDFLQAKQWVEESGIRWGLDSHTGSEFELPETRQNTWQFGIQRMLLGYAMPE
SAGLFEAQEGSLSPYNEVQGMGAELAGKLAHFIQQISQYRRKLSHVQSIDAWRETLVAML
DDFFSVELEGEMALKSIRDTLSQLKEQLADAAFDDALSPSIVSQYLQNKLSGTRVSQRFL
AGQVNFCTLMPMRSIPFRTVCLLGMNDGVYPRSMPPEGFDLMTGRTKPGDRSRRDDDRYL
FLEAVLSAQQSLYISYVGRSIQDNTERVPSVLVSELMEYCHQNYCLDGDQDQPVDDSGDK
LLNELVNVHAMVPFSPSAFQGSHSSYAKEWIPAALTQRNQSQGHARGEFNRALDDYLLGA
TFPIELDLVELQRFWRLPVQYFFNRRLKVMFEPPLPVMEDDEPFVLGGLESYQMRDELLE
TLLETAITQPSAKADVLKHFMSEQRAQGKLPVGAFGDIEFETNRVQAEELVDKLAFLSGA
PQDDLEIDLTFNVLGEGKNIRLTGWLTQCYQSGLIRYRSGKIRAQDYLAAWIDHLAMSAS
GQARKTHVIGYDRKEGAVHLVYPAMADAEQAKQFLAELVRLFFEGMTKPLPYFPKTALAC
VEAGFSRGHWADDEEKSLKKMADAFNDGYMSPGEGNNAYISRIWSAWNDELAAEVRTLTA
LVLQGARLTAMDAESIPK
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
ttgtttactgtctatcactccaatcaggtcgatgttctcaaatcacttcttgttgaactg
attcgcatcaacccattagaaaacccattcgaaaaagagcaaattctggtgcagagcccg
ggtatgtctcagtggttaaaaatggaattggcgaaagagtttggtgttgcggcaaaccta
gagtttccgctgccagcgacctttatctgggaaatgtttacccaagtattggctgatgtg
ccaaagcgcagtgccttcaataaagaagccatgacgtggaagctgatgcacttgcttccg
ggtttgttgaacgaagcgtcattcgaacctttggcacgttatcttcaagacgacagtgac
aactccaagctgtatcaattagcagagaaaattgccgatatctttgatggctatttggtg
taccgcccagagtggattgcaagctgggaagcaggacaaacggtgcctgaacttgaagac
gagcatccatggcagccgattttgtggcaagcattgtacgaccacacggttactcttggg
caatcgccttatcatcgtgccaatttgtacgaacacttcattgatacgctagaaaacttc
aacggcaattttgatcatctgccgaagcgtctgtttgtgtttggtatctcttcactgcca
ccacgttacatggatgcgctaaaagccattggtgaacatattgatgtccatctaatgttt
actaacccctgccgttattattggggtgaagtacgcgaccgtaaattcctagctcgctta
gcagcaaaacatcgtcagcacgtggtgtggcaagaagaccattctgaagtgcaaggtgag
actgagcagctaaaaggttcactagaagaaaacgtggtggatgagctgcataccgatgtg
gtgggtaacagtttgttggcttcgatgggcaaacttggacgcgataacatgtatctgttg
tcgcagcttgaatcccatgagatagaagcttttgttgatgttgagcgcgacactctgctc
catcaacttcaagccgacattcttaatttagaagagcaccaagacgacgagcaaatcgac
agcagtcagcacaaacaagtggtgagtttaggtgataaatctctgagcttacactcttgc
cacagcccaatgcgagaagtggaagtgctacacgatcagcttttggcaatgttcgatgct
gacccaacactgaaaccgcgcgatattattgtcatggtggcagacatcaatgcctacagc
cctgcgattcaggcggtattcggcaatgcgccgggtgagcgtttcattccttactcaatt
tcagaccgaacggccgatcaagaaagcccaattttggcggctttcatgcaacttgttaat
ttaccgaatacacgttgcttggcttctgaattacttgagctgttagaaacgccggcgatt
ttgaagcgattcgacttaagcgaagatgatttccttcaagccaaacaatgggtggaagaa
tccggcattcgctgggggctagatagccataccggcagcgaatttgaactgccagaaaca
cgccaaaacacatggcaatttggtatccagcgtatgttattaggttacgcgatgccagag
tctgctggtttgtttgaagcgcaagagggtagcctctcgccatacaatgaagtgcaaggt
atgggcgcagaactggccggtaagttagctcactttattcaacaaattagccaatatcgc
cgcaaactttcccatgttcagtcgattgatgcatggcgtgaaaccttggtggcaatgttg
gatgacttcttctctgttgagttagaaggggaaatggcgcttaagtcgattcgagatacc
ctgagccaactgaaagaacagctagctgatgcggcatttgatgatgccttgtcgccttct
attgttagccagtatctacaaaacaagctgtcaggaacacgggtcagccagcgcttcctt
gccggacaagtgaacttctgtacactgatgccgatgcgctcgatcccatttagaaccgta
tgtttactcggtatgaacgatggtgtttacccgcgctcaatgccaccagaaggttttgac
ctaatgacagggcgcactaaaccgggcgaccgttcacgccgagacgatgaccgttaccta
ttcttagaagccgtgctgtctgcacagcaaagtttgtacatcagttatgttggacgttct
atccaagacaacactgagcgcgtgccgtctgtgttggtgtcggagttgatggaatattgc
catcagaactactgcctagatggcgatcaagaccagcctgtcgatgactccggagataaa
ctactcaacgagttagtgaacgtacatgccatggtgccattcagcccaagcgcattccaa
ggttctcattcaagctatgccaaagagtggattccagctgcgttgacccaacgcaatcaa
tcgcaaggtcatgcgcgtggcgagtttaaccgcgcattggatgattacttgcttggcgca
accttcccaatcgaattggatttggtggaattacaacgcttctggcgtttgcctgtgcag
tatttctttaaccgtcgtttgaaagtgatgttcgagccgccgttacctgtgatggaagac
gatgagccgtttgttttaggtggcttagaaagctatcagatgcgcgatgagttattagaa
accttgctcgaaaccgccattactcaaccgtccgcaaaagcagacgtactcaagcacttc
atgagtgagcaacgcgcgcagggcaaattaccggttggcgcatttggtgatatcgagttt
gaaaccaaccgcgtgcaagcggaagagttggtggataagttggcgtttttatccggtgcg
ccgcaagacgatttagaaatcgaccttaccttcaatgtgcttggtgaaggaaaaaacatc
cgtctaaccggttggctaactcagtgttatcagtctgggttgattcgctaccgaagcggt
aaaattcgtgcgcaggattacctagctgcatggattgatcatcttgctatgtctgcctct
ggtcaggctagaaagacccacgttatcggttatgaccgcaaggaaggcgcggtgcattta
gtttaccctgcaatggcagacgctgagcaagcgaaacaatttcttgctgaattagtacgt
ctgttttttgaaggcatgactaagccattgccatatttcccgaaaacagcactggcgtgt
gtcgaggcgggctttagtcgtggccactgggctgatgacgaagagaaatcgctgaagaaa
atggcggacgcattcaatgatgggtacatgagcccaggcgaaggaaacaatgcgtatatt
tcgcgtatttggtctgcttggaatgatgagcttgcagcagaagttcgcacactgactgca
ttggttcttcaaggcgcaagattgacggcgatggatgctgaaagtatacccaagtaa
DBGET
integrated database retrieval system
