Vibrio harveyi: AL538_06725
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Entry
AL538_06725 CDS
T04380
Name
(GenBank) tRNA pseudouridine(13) synthase TruD
KO
K06176
tRNA pseudouridine13 synthase [EC:
5.4.99.27
]
Organism
vhr
Vibrio harveyi
Brite
KEGG Orthology (KO) [BR:
vhr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vhr03016
]
AL538_06725
Enzymes [BR:
vhr01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.27 tRNA pseudouridine13 synthase
AL538_06725
Transfer RNA biogenesis [BR:
vhr03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
AL538_06725
Prokaryotic type
AL538_06725
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruD
Motif
Other DBs
NCBI-ProteinID:
AMF97462
LinkDB
All DBs
Position
1:complement(1433101..1434144)
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AA seq
347 aa
AA seq
DB search
MSDILSSLAYLTGKPVASAKIKARPEHFQVREDLGFAFTGEGEHLMVRIRKTGENTSFVA
NELAKACGVKSKDVSWAGLKDRHAVTEQWLSVHLPKGETPDFSAFLAQYPSIEILATDRH
NKKLRPGDLVGNEFVVTLSEVTDIADVEQRLEKVKQVGVPNYFGSQRFGNDGNNLEEARR
WGRENVRTRNQNKRSMYLSAARSWIFNRIVSARLENGVFDKFIDGDVAQTASGTQLVDAS
NIAELQAQFAQGEVAITAAMAGDNALPTQADALTLEQPFLDEEPDLMALIRGNRMRHDRR
DIALKPQDLAWTVDGNNITMTFSLDAGSFATSIVRELVIEEKVEREY
NT seq
1044 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacattttatcttcattggcttacctaacaggtaagccagttgcatctgcaaaa
atcaaagcgcgaccagagcactttcaggttcgcgaagatttaggttttgcctttacgggt
gaaggcgagcatttaatggttcgtatccgtaaaacaggtgagaacaccagtttcgttgct
aacgaactagcaaaagcttgtggtgttaagtcgaaagacgttagttgggcgggtcttaaa
gaccgtcatgctgtgactgaacagtggctaagtgtgcatttaccaaaaggtgaaacgcca
gatttttcagcatttttggcgcaatacccgagcatcgagatcctagcaacggatcgtcac
aataaaaaactgcgccctggtgacttagtagggaacgagttcgtggttactttgtctgaa
gtgacagatatagcggatgttgaacaacgtcttgaaaaagtgaaacaagtgggtgtgcca
aactactttggtagtcagcgttttggtaacgatggcaacaaccttgaagaagcacgtcga
tggggacgcgagaacgttcgtacccgcaatcaaaacaaacgcagcatgtatctgtcagcg
gctcgttcgtggatcttcaaccgaattgtttcagctcgcctagagaatggtgtatttgac
aagttcatcgacggtgatgttgcgcagacagcttctggcactcagttagttgatgcaagc
aacatcgccgagttacaagcacaatttgctcaaggcgaagtggcgatcaccgcggcaatg
gcgggcgataacgcactaccaactcaagcggatgcgctaaccttagaacaaccgttctta
gatgaagaaccagatttgatggcactgattcgcggtaaccgtatgcgtcacgaccgccgc
gatatcgcactcaagccacaagacctagcttggacggtcgatggtaataacatcacgatg
acattctcgctggatgcgggttcatttgcgacctcaatcgtgcgtgagctggtcatcgaa
gaaaaggtagaaagagaatattaa
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