Vibrio harveyi: AL538_06765
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Entry
AL538_06765 CDS
T04380
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
vhr
Vibrio harveyi
Brite
KEGG Orthology (KO) [BR:
vhr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
vhr03009
]
AL538_06765
Enzymes [BR:
vhr01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
AL538_06765
Ribosome biogenesis [BR:
vhr03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
AL538_06765
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
TRAM
TRM5-TYW2_MTfase
MTS
RrnaAD
Cons_hypoth95
PCMT
Methyltransf_23
Methyltransf_11
Methyltr_RsmB-F
PrmA
Methyltransf_12
Methyltransf_15
TPMT
Ribosomal_L22
Motif
Other DBs
NCBI-ProteinID:
AMF97470
LinkDB
All DBs
Position
1:complement(1442986..1444305)
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AA seq
439 aa
AA seq
DB search
MARIFQPKKKTQLNTRHQAVQVERLDHHGAGIAYLKKKPLFIDGALPGEEVVTQLVEEKS
KFARGKLIKILKPSDARVEPFCPHYHECGGCDLQHLNYDQQLTHKQQTLRQLMRKFAGSD
IELDAPVLGESLGYRRRARVSLFVDKKTRQLHFGFRKKQSKQIAQVTDCPVLAPELNVLL
PEIYSTLKAFKKPEQLGHVELVLGDNGPCVTLRHLSKLTEKETNTLVELAKRHHASLYLM
PETDQLDLIEGEVPFYQEAGVTVPFTPNNFIQVNQAVNQKMVAQAVEWLDPQSDERVLDL
FCGLGNFSLPIAKRAKHVVGVEGVAEMVEKAANNASLNQINNAQFYHANLEQDFEGQVWA
AEQFDKVLLDPARAGASGIIDQVSALGALRVVYVSCNPATLARDSQSLLEQGYQLTKLGM
LDMFPHTSHLESMALFEKS
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
atggcacgtatctttcaacctaaaaagaaaacgcaactgaatacccgccaccaagcggta
caagtggagcgtttggatcaccacggcgcaggcattgcttaccttaagaagaaaccattg
tttattgatggtgcgctaccgggtgaggaagtggtaacccaattggtggaagaaaagagc
aagttcgctcgtggtaagttgattaaaatccttaaaccgagtgacgctcgcgtggagcca
ttttgtccgcactaccatgaatgcggtggctgtgacctgcaacatctgaactatgaccaa
caattgacgcacaagcagcaaacgcttcgccagttgatgagaaaatttgccggcagtgat
atcgagttggatgcgcctgtattgggtgagtctcttggctaccgtcgccgtgctcgtgtg
agcttgttcgtagataaaaagactcgtcagttgcactttggtttccgtaagaaacagagt
aagcaaatcgcgcaagtgacagactgcccagtgctcgcgcctgagttgaatgtgctattg
ccagaaatctactcgacgttaaaagcgtttaagaagccagagcaacttggtcacgtagag
ttggtgctaggtgacaatggtccatgcgtaacattgcgtcatctgagcaaattgactgaa
aaagaaaccaacaccttggtggaattagcgaagcgtcaccatgcatcgctctacctgatg
ccagaaacggatcagcttgatttgattgaaggtgaagtgcctttctatcaagaagcaggt
gtcaccgtaccatttacgccaaataactttattcaagtgaaccaagcggtaaaccagaaa
atggtcgctcaggcagtggagtggttagacccacaaagtgacgagcgagtgttagatttg
ttctgtggtttaggtaacttcagtttgccaatcgcaaaacgtgcaaaacacgtggttggc
gtagaaggcgtggcagaaatggtggaaaaggcggcaaataatgcatctttgaaccaaatc
aataacgcgcaattttatcacgctaaccttgagcaggattttgaagggcaagtttgggcg
gctgaacaattcgacaaagtgctgcttgatccggcacgtgcgggcgcgagtgggatcatc
gatcaagtttctgcgcttggcgcactgcgtgtagtttatgtttcgtgtaatcctgctacc
cttgcaagggatagccagagcttgctggagcaaggctaccaattgaccaaattaggtatg
ctggacatgttccctcataccagccatctagaatcgatggcactgtttgaaaagtcctga
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