Vibrio harveyi: AL538_11835
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Entry
AL538_11835 CDS
T04380
Name
(GenBank) deoxyribonuclease IV
KO
K01151
deoxyribonuclease IV [EC:
3.1.21.2
]
Organism
vhr
Vibrio harveyi
Pathway
vhr03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
vhr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
AL538_11835
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vhr03400
]
AL538_11835
Enzymes [BR:
vhr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.21 Endodeoxyribonucleases producing 5'-phosphomonoesters
3.1.21.2 deoxyribonuclease IV
AL538_11835
DNA repair and recombination proteins [BR:
vhr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
AL538_11835
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AP_endonuc_2
Motif
Other DBs
NCBI-ProteinID:
AMF98358
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All DBs
Position
1:2500003..2500890
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AA seq
295 aa
AA seq
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MTNMKNKFGNKFIGAHVSAAGGVDQAPLRAREIGANAFALFTKNQRQWVAKPLEEKTISA
FKANCKMLGFGAEHILPHDSYLINLGAPEEEKLNKSRAAFIDEMERCNQLGLTLLNFHPG
SHLKKVSEQECLATIAESINLAHKAVPNVIAVIENTAGQGTNLGWKFEHLAEIIEQVEDK
ERVGVCLDTCHTFTAGYDLRTKEDCEHTFAEFDRIVDMHYLRAMHLNDSKVEFASKVDRH
HSLGKGEIGWSCFEYIAKDPRFDGIPLILETIDPDIWQQEINTLRQFHIEEMVNS
NT seq
888 nt
NT seq
+upstream
nt +downstream
nt
atgacaaacatgaaaaacaagtttggaaacaaatttattggtgctcacgtgtccgcggct
ggaggagtcgatcaagcgcctcttcgtgctcgtgagattggtgcgaatgcgtttgctctg
tttactaagaaccaacgtcaatgggttgctaaaccactcgaagaaaaaaccattagtgca
ttcaaagcaaactgcaaaatgcttggcttcggcgccgaacacattctgccccatgactct
tatctgattaacttgggggcgccggaagaagaaaagctgaataaatcccgcgcggcattt
attgacgagatggagcgttgtaaccagttaggtttaaccttgctcaacttccaccctggt
agccacttaaagaaagtgtcggaacaggagtgtttagcgacgatcgctgagtcgatcaac
ctcgcgcacaaagcagtgccgaatgtgatcgctgtgattgagaatacggcaggtcagggc
actaacttaggttggaagtttgagcatttggctgaaatcatcgagcaagtagaagataaa
gaacgtgttggtgtgtgtcttgatacttgccacacgtttaccgcgggttacgatctgcgt
actaaagaggattgtgagcatacctttgctgagttcgatcgtatcgttgatatgcactat
ttaagagcaatgcatctaaatgattcaaaagtcgaattcgctagcaaggttgaccgtcac
cactcattaggcaaaggcgagatcggctggagctgttttgagtacatcgctaaagatcca
cgttttgatggtatccctctgattttagaaacaattgatccagatatttggcagcaagaa
atcaacaccttacgccaattccacatagaagaaatggttaattcctaa
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