Vibrio harveyi: AL538_14570
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Entry
AL538_14570 CDS
T04380
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
vhr
Vibrio harveyi
Pathway
vhr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vhr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AL538_14570
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vhr03400
]
AL538_14570
Enzymes [BR:
vhr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AL538_14570
DNA repair and recombination proteins [BR:
vhr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AL538_14570
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
Glyco_tran_WecG
T1R_D3-like
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AMF98846
LinkDB
All DBs
Position
1:complement(3094913..3098374)
Genome browser
AA seq
1153 aa
AA seq
DB search
MTKATILSVTNPSERGDKKQLGNLPGAALPMAIAELAKQHSSHSLLVVPDPQIALKLQAE
IEQFTDQPVSLFPDWETLPYDNFSPHQEIISDRIARLYQLPNQNRGVTIVPVSTVLQRQS
PRDFLLQHTLIVKTGDQFSLEKLRVQLENSGYRHVDQVFGPGEYASRGSILDLFPMGSSD
PYRIDFFDDEIDTIRTFGPENQRSIEDIQQIQLLPAHEFPTTKAAIEDFRTRWRSQFEAR
REPESIYMQVTKGTWPAGIEYWQPLFFDHTETLFDYLPDDSQLITYGDIEAAVDTFLNDV
DYRYDQKKIDPLRPLLAPHELWLKKDELFTHFKQLPQAQLSLEKIVKRAGRQNLAVQSLA
ELGVQQQNKEPLARLRQFSEQFAGKIVFSVESEGRREALTELLQGIKVRPVVHGSLYQAL
DSDDRFSLILGAAEHGFIHEELNFALICESDLLGDRVIQRRRKDKKAVNSDTVIRHLAEL
KPGQPVVHIDHGIGRYIGLQTLEAGGMKTEYVTLEYQNDAKLYVPVSSLNLISRYSGGAE
ESAPLHKLGGEAWAKARRKAAEKVRDVAAELLDVYAKRELKPGYKFELDRGQYATFKATF
PFEETDDQSMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNSKQVAVLVP
TTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKVILQDVADGKVDIVVGTHKLLSSD
IKFKDLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIA
TPPARRLAIKTFVRQREDSVVREAVLREIMRGGQVYFLHNQVETIEKTAEDLQKLIPEAR
VTVAHGQMRERELERIMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADNLGLAQLH
QLRGRVGRSHHQAYAYLLTPHPKAITKDAIKRLDAIASLEDLGAGFTLATHDLEIRGAGE
LLGDEQSGQIQSVGFTLYMEMLEQAVEALKEGKEPSLDDLLREQTEIEMRIPALLPDDYI
PDVNTRLSMYKRIASVTDKEGLSELKVELIDRFGLLPDATKNLLSVSELKIAAACLKAKK
IEAHDKGGFIEFYPDADINPAYLVKLLQSQPQKFAMEGPTKFKFSVPLTDRRKRIQFVQD
LLNDFKQNLLPTS
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaagcaacgattctgtccgtcaccaatccgtctgagcgtggcgataaaaaacag
cttggcaacttaccgggagcggcattgccgatggcgattgccgagctagcaaaacaacac
tcaagccactctctgctagtggtaccagacccgcaaatcgcactcaaactgcaagcagaa
attgagcaatttaccgaccaaccggtaagcctattccctgattgggagacgctgccatac
gacaacttttctccacaccaagaaatcatctcagatcgtattgcccgcttatatcaattg
ccaaaccaaaatcgtggtgtgaccattgtgccagtgagcacggtattacaacgccagtcc
ccgcgtgatttcttacttcagcacaccttgattgtgaaaacgggcgaccaattctcactg
gaaaaactgcgtgtgcaactagagaactctggctaccgtcacgttgatcaagtgtttggt
ccgggtgaatatgcaagccgaggttcgatcctagatttgttcccaatgggcagttcagat
ccatatcgcattgatttctttgatgacgagatcgacaccattcgcacatttggtccagaa
aaccaacgttcgatcgaagacattcagcaaatccagcttctgcctgcgcatgaatttccg
acgacgaaagcggctattgaagatttccgtactcgttggcgctctcagtttgaagctcgc
cgcgagcctgaatcaatttacatgcaagtcaccaaaggcacttggccagcgggcattgaa
tattggcagccactgtttttcgatcatacagaaacgcttttcgattatttacccgatgac
tctcaactgatcacctacggcgatattgaagccgcagtcgataccttcttgaatgacgtt
gactaccgctacgatcaaaagaaaatcgatccactgcgtccgttgttagcaccacatgaa
ttgtggctgaagaaagatgagctattcactcacttcaaacaactaccgcaagctcagctg
agcctagagaaaatcgttaaacgtgcaggtcgccagaatctcgccgttcaatctctagcc
gagcttggtgttcaacagcagaacaaagagccgttagcacgtttacgccaattcagtgag
cagtttgcgggtaaaatcgttttctctgtcgagtcagaaggtcgccgtgaagcattaaca
gagctactgcaaggcattaaagtgcgcccagtagtccatggttcactatatcaagcgctg
gactctgacgatcgtttcagcctaatcctaggtgctgcggaacatggttttattcatgaa
gagctaaatttcgcgctgatctgcgaaagcgatctgcttggcgatcgcgttatccaacgt
cgccgtaaagacaaaaaagcggtcaacagtgacaccgtcatacgccacctagctgaactt
aagccgggtcagcctgttgtgcacatcgatcacggtatcggccgctacataggcctacaa
actcttgaagctggcggtatgaaaacggaatacgtaacacttgagtatcaaaatgatgcc
aagctttacgtacccgtatcttcactgaacttgattagccgctactctggcggagctgaa
gaaagtgcaccgctgcataaactaggcggtgaagcatgggcaaaagctcgccgtaaagct
gcagagaaagttcgtgacgttgcagcagagcttctagatgtttatgccaagcgagagcta
aaaccgggctataaatttgagctcgaccgcggtcaatacgcaactttcaaagcaactttc
ccgtttgaggagactgacgatcagtcaatggcaattaatgcggtcttgtctgacatgtgc
caagcaaaagccatggaccgcctagtttgtggtgacgttggttttggtaaaacagaagtc
gcaatgcgcgctgcatttgttgccacagacaacagtaagcaagtggcagtcttagtacca
accactctgcttgcacagcaacactttgaaaacttccgcgaccgctttgctaacttgcca
attcgcgtagaagtcctgtcgcgctttaaatcggcaaaagagcaaaaagtgattctccaa
gatgtcgctgatggcaaagttgatattgtcgttggtactcacaagttgctatcaagcgat
attaagttcaaagatcttggcttgttgattgttgatgaagaacaccgatttggtgtgcgt
caaaaagaaaaagtgaaagcaatgcgtgccgatgtcgacatcttaacgcttaccgcaaca
ccaattccgcgcacattaaacatggcaatgagtggcatgcgcgatttgtcgatcatcgca
acaccaccagcacgccgcttggcgattaagaccttcgtacgtcaacgcgaagactccgta
gtacgcgaagcagtactccgtgaaatcatgcgtggtggtcaggtttacttcctacataac
caagtcgaaacgattgaaaaaaccgccgaagatttgcaaaagctgattccggaagcgcga
gttaccgttgcacatggtcagatgcgtgaacgcgagctcgagcgcatcatgaatgatttc
tatcatcagcgcttcaacttactcgtatgtactacgatcatagaaacaggtattgacgta
ccaaccgccaacaccatcatcatggaccgagcagataacctaggtcttgcgcagttgcac
cagcttcgtggtcgtgttggtcgttcgcaccaccaagcgtacgcttacctgttgacgcca
catccaaaagcaataacgaaagatgcaattaagcgtcttgatgcaattgcgtcactggaa
gaccttggtgctggcttcactcttgctacccacgatcttgaaatccgcggggctggtgag
ttactgggtgacgaacaaagtggtcaaattcaatcggttggttttacactatatatggaa
atgcttgaacaagccgttgaagccttaaaagagggcaaagagccttcactggatgatcta
cttcgagaacaaactgaaatcgaaatgcgcattccagctcttttgccagatgactacata
ccagacgtcaacactcgcctatctatgtacaaacgaatcgcgagcgtgacagataaagaa
gggctatcagaattaaaagtggaactgattgatcgtttcggcttgctacctgatgcaacg
aagaacttactgtctgtctctgagctaaaaattgctgctgcatgtctcaaagctaagaaa
attgaagctcatgacaaaggtggtttcatcgagttttaccctgatgctgacataaaccca
gcatatttagttaaactcctgcaatcacagccgcaaaaatttgcaatggaaggtccaact
aagttcaagtttagcgtaccattgacggaccgacgtaaacgcattcagtttgttcaagac
ttactgaatgattttaaacagaatttattaccaacgagctaa
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