Vibrio harveyi: AL538_14790
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Entry
AL538_14790 CDS
T04380
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
vhr
Vibrio harveyi
Brite
KEGG Orthology (KO) [BR:
vhr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vhr03032
]
AL538_14790 (topA)
03400 DNA repair and recombination proteins [BR:
vhr03400
]
AL538_14790 (topA)
Enzymes [BR:
vhr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
AL538_14790 (topA)
DNA replication proteins [BR:
vhr03032
]
Prokaryotic type
DNA Topoisomerases
AL538_14790 (topA)
DNA repair and recombination proteins [BR:
vhr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
AL538_14790 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Topo_Zn_Ribbon
TOP1_ZnF
Toprim
zf-C4_Topoisom
Motif
Other DBs
NCBI-ProteinID:
AMF98889
UniProt:
A0A2S0SB33
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All DBs
Position
1:3149039..3151669
Genome browser
AA seq
876 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGKDFIVKSSVGHVRDLPTAGQSTGEKKAAAISTKGMSPE
EKARVKKEKDRKALIKKMGINPYHDWDANYQILPGKEKVVSELQKLAKDADYVYLATDLD
REGEAIAWHLREIIGGDEERYKRVVFNEITKNAIQQAFQTPGELNMDGVNAQQARRFMDR
VVGFMVSPLLWKKVARGLSAGRVQSVAVKLLVEREREINAFIPEEFWDINANTHTKDKTA
FKLLVAQKDGVAFKPVNEAETKAAMSVLENASYEVCKREDRPTKSKPSAPYITSTLQQAA
STRLGYGVKKTMMLAQRLYEAGYITYMRTDSTNLSAEAVDAVRGFIGSEFGDKYLPAKPL
TYGSKEGAQEAHEAIRPSDVAVKAEDLQGVDADAHKLYALIWNQFVACQMTPAEYDSTTI
SVKAAEYTLKAKGRILKFDGWTRVQRPMGKNEDTILPAVQLGDKLDLESLDPKQHFTKPP
ARFTEAALVKELEKRGIGRPSTYASIISTIQDRGYVKVEQRRFYAEKMGEIVTDRLDDSF
NDLMNYDFTARMEQKLDQIAEGDVMWKDVLDNFFTDFTGDLEKAEQDENEGGMKLNHIVM
TDIECPTCSRPMGIRTASTGVFLGCSGYALPPKERCKTTINLGDEDGIINVLEEDVETAA
LRAKKRCPICETAMDAYLIDDKRKMHVCGNNPNCEGYIVEHGEFKVKGYDGPVVECDKCG
SDMVLKNGRFGKYMDCTSETCKNTRKILKNGEVAPPKEDPVHFPELPCENSDAYFVLRDG
ASGLFMAASNFPKSRETRAPLVSELARFEERLPEKFKYLTTAPTADPDGRPAVVRFSRKS
KENYVRTEDNGKPSGWTALFIDGKWEITDKRKKAKA
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaatcgctcgttatagtggagtcaccagccaaggctaagacgataaataaatac
cttggtaaagactttattgttaagtctagtgttggtcacgtgcgtgatctgcctacggcc
ggtcaaagcactggtgagaaaaaagccgcagccatttctactaaaggaatgagcccggaa
gaaaaagcgcgtgtcaaaaaagaaaaagaccgtaaagctctaatcaaaaaaatggggatt
aacccatatcatgactgggatgcgaattaccaaatccttccaggcaaagaaaaagtcgtt
agcgaactgcaaaaattagccaaagatgctgattacgtttatctcgcaaccgatttagac
cgcgagggggaagcaatcgcatggcaccttcgtgagatcatcggtggcgatgaagagcga
tacaaacgcgtagtgtttaacgagatcacgaagaatgcaatccagcaagctttccagacg
cctggtgagctaaacatggatggtgttaacgcacagcaagcacgtcgattcatggaccgt
gtagtaggtttcatggtttctccattgctatggaagaaagtggcgcgtggtctgtctgct
ggtcgtgtacaatcagtagcggttaaactactggttgagcgtgagcgtgaaatcaacgct
ttcattccagaagaattctgggatatcaacgcaaatacgcacacaaaagataagacggcg
ttcaaactgcttgttgcacaaaaagatggcgttgcgtttaagcccgttaacgaggctgaa
accaaggcggcgatgtcggtactggaaaacgcaagctacgaagtatgtaagcgtgaagac
cgcccaacgaaaagtaagccgtctgcaccatatattacgtctacacttcagcaagcagcg
agtactcgtttaggctacggcgttaagaagacaatgatgctggcgcagcgtctatacgaa
gcgggttacatcacctatatgcgtaccgactcaaccaacttgagcgcggaagcagtagat
gcagttcgcggtttcatcggttctgagttcggtgacaaataccttccagctaaaccgcta
acatacggtagcaaagaaggcgcacaagaagcgcacgaagcaattcgtccttccgatgtt
gctgtgaaagctgaagacctacaaggtgttgatgcggacgcacacaagctgtacgcgctg
atttggaatcaattcgttgcgtgtcaaatgacgcctgcagaatacgattcaaccaccatc
agtgtgaaagcggctgagtacacgctaaaagcgaaaggtcgtattcttaagtttgacggt
tggactcgcgttcaacgcccaatgggtaaaaacgaagatacgattcttcctgctgttcaa
ctgggcgataagctagatcttgaatcactagatcctaaacagcactttaccaagccacct
gcacgtttcacagaagcggcactggtaaaagaacttgagaagcgcggcattggtcgtcct
tctacatacgcttcaatcatctctacgatccaagatcgcggctacgtaaaagtagaacaa
cgtcgtttctacgcagagaagatgggcgagattgttactgaccgtctggatgacagtttt
aatgatctaatgaactacgacttcactgcgcgtatggagcagaagcttgaccaaatcgct
gaaggcgatgtgatgtggaaagatgttctagataacttcttcacagacttcactggcgat
ctagagaaagcggagcaagacgagaacgaaggcggcatgaagttgaatcacattgtgatg
acagatatcgagtgtccgacttgtagccgtcctatgggtattcgtaccgcgtcaacaggc
gtattcctaggctgttctggttacgcattgccacctaaagagcgttgcaagacaaccatc
aacttgggtgacgaagacggtatcattaacgttctagaagaagatgtggaaacagcagct
ctgcgtgctaagaagcgttgtcctatctgtgaaacggcgatggacgcatacttgatcgat
gataaacgcaagatgcacgtttgtggtaacaacccgaactgtgaaggctacatcgtcgag
catggcgaattcaaagtgaaaggctatgatggtccagttgttgagtgtgacaagtgtggt
tctgacatggtgcttaagaacggtcgcttcggtaaatacatggattgtacaagtgaaacg
tgtaagaacactcgtaagatccttaagaacggtgaagtagcaccgccgaaagaagatcca
gttcatttccctgaacttccatgtgaaaactcagatgcgtactttgttttacgtgatggt
gcttctggtctgtttatggctgcgagtaacttccctaaatcacgtgagactcgtgcacca
ttagtttctgaacttgctcgcttcgaagaacgtcttcctgagaagtttaagtatctgact
accgcgccaactgcggaccctgatggtcgccctgctgttgttcgctttagccgcaagagc
aaagagaactacgtgcgcactgaagacaatggcaaaccaagtggttggacggcattgttt
atcgatggtaagtgggaaatcacggacaagcgcaaaaaagcgaaagcataa
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