Vibrio harveyi: AL538_24045
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Entry
AL538_24045 CDS
T04380
Name
(GenBank) ATP-dependent helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
vhr
Vibrio harveyi
Pathway
vhr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vhr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AL538_24045
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vhr03019
]
AL538_24045
Enzymes [BR:
vhr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AL538_24045
Messenger RNA biogenesis [BR:
vhr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AL538_24045
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNF2-rel_dom
P-loop_SecA
AAA_19
Helicase_C_2
Helicase_RecD
UTP25_NTPase-like
ERCC3_RAD25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AMG00751
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All DBs
Position
2:1566336..1567589
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AA seq
417 aa
AA seq
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MSVNFADLGIEQPLVETLGGLNIVTPTPVQEKSIPHVLEGKDLLAAAQTGTGKTAAFGLP
IIQTVQQQKRNGTPQALILVPTRELAQQVMDNLTQYSANTDLKIVCVYGGTSIGVQKKKL
EEGADILIATPGRLLDHLFNGNVNISKTGILVLDEADRMLDMGFWPDLQRILRRLPQTKQ
TMLFSATFEKRIKTIAYKLMDSPVEVEVSPANTTAETVKQMVYPVDKKRKRELLAYLIGS
RNWQQVLVFTKTKQGSDELAKELKLDGIKAVSINGDKSQGARQRALDEFKEGKVRALIAT
DVAARGLDIQQLEQVVNFDMPFKAEDYVHRIGRTGRAGKSGLAVSLMSRDEEYLLHAIEN
LLDQRLPQEWLEGFEPSLIEEIEPERNSGGRRKSRSAEKRKMKAKLAIHKNRGKNRK
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atgtccgttaatttcgctgatcttggcattgaacaaccgttggttgagaccctaggtggt
ttgaatattgttacgccgactcctgttcaggaaaaatcgattccacacgtgctggaaggt
aaagatctgcttgccgctgcacaaactggtacaggtaagactgcggcatttggcttgcca
atcatccagactgttcagcaacagaaacgtaatggcacgccgcaagcactgattctcgtg
ccgactcgagaactggctcagcaagtgatggacaacctcacgcaatactcagcaaatact
gatcttaaaatagtgtgtgtttacggtggcacgagtattggcgtacaaaagaaaaagctt
gaagagggcgcagacatccttatcgcaacaccggggcgcctacttgaccatttgtttaat
ggcaacgtaaacatttctaaaacaggcatccttgttttggatgaagcggatcgtatgttg
gatatgggtttttggcctgatctgcaacgtatccttcgtcgtttaccacaaacgaaacag
accatgcttttctcagcgacgtttgagaagcgcattaaaaccattgcttacaaattgatg
gattctccggtcgaggtggaagtatcaccagcaaatacgacggcagaaacagtgaaacaa
atggtttacccagtcgataagaagcgtaaacgcgaactgctagcgtacttaattggttca
cgtaactggcagcaggtattggtattcaccaagactaagcaaggcagtgacgaattggct
aaagagcttaaactggatggcattaaagcggtctctatcaatggagataaatctcaaggt
gctcgtcaacgtgcgcttgacgagttcaaagaaggtaaagtacgtgcgttaattgcaact
gatgttgccgctcgcggtttagatattcaacaacttgagcaagtcgttaacttcgatatg
ccatttaaggcggaagactacgttcaccgtattggtcgtacgggacgtgcgggtaaatct
ggtcttgcggtttctttgatgagtcgtgatgaagagtatctattgcatgccattgaaaac
ctgcttgaccaacgcttaccgcaagagtggttagaaggctttgaaccaagcttaatagaa
gaaattgaacctgaacgtaatagtggtggtcgtcgtaagagtcgttctgcagaaaaacgt
aagatgaaggcaaaactggcaatccataaaaaccgcggaaaaaaccgaaaataa
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