Vibrio harveyi: AL538_25490
Help
Entry
AL538_25490 CDS
T04380
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
vhr
Vibrio harveyi
Pathway
vhr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vhr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AL538_25490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vhr03019
]
AL538_25490
03009 Ribosome biogenesis [BR:
vhr03009
]
AL538_25490
Enzymes [BR:
vhr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AL538_25490
Messenger RNA biogenesis [BR:
vhr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AL538_25490
Ribosome biogenesis [BR:
vhr03009
]
Prokaryotic type
rRNA helicases
AL538_25490
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
Flavi_DEAD
WSD
Motif
Other DBs
NCBI-ProteinID:
AMG01017
UniProt:
A0A3A1PT84
LinkDB
All DBs
Position
2:complement(1891944..1893875)
Genome browser
AA seq
643 aa
AA seq
DB search
MQDSVIQFSDLSLNDSILSALDGMGFVSPTPIQAAAIPHLLEGADALGKAQTGTGKTAAF
SLPLLNKLDLDQRKPQAIVLAPTRELAIQVAAEMKNLGKNIKGLKVLEIYGGASIVDQMR
ALKNGAHVVVGTPGRVQDLINRERLHLDEVSTFVLDEADEMLNMGFVDDVTAIMEHAPES
AQRVLFSATMPPMLKNIVERFLRDPVTIDVAGKNHTVDKVQQQFWVVKGVEKDEAMSRLL
ETEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILV
ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTI
ERVTKSSMEEIQLPLRDQVAEARLNKLAAELEAEKEHKALDKFAELVEKLQTSLEIDPTM
LAAMLLKRQQGKRPLFYIGEDPMIEAIERDKQRRKERREGGRDGGRNFNNQDWDTYQLQV
GREQGVQVKDIVGALANELGLGKGSIGAIKLAQGHTFVQLPKAMTSDAANKLSKLRIRQQ
DVGAVVCDFDDFRESRGGRRDGGRRDGGRRDGGGYRGNRDGNREGGRREGGRREGGFRGN
RDGNRDGNREGGERRFDRNRGGDHRGAHRGERGHGRGRRSQEA
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atgcaagattctgttattcaattcagcgatttatctctgaatgattctatcctttctgct
ctagacggaatgggtttcgtgtcaccaactccaattcaggctgcggcaatcccacacctg
ttggaaggtgctgacgcgctgggtaaagcacagacgggtacaggtaaaacggcagcattc
tctctgcctcttctaaacaagcttgatcttgaccaacgtaaaccacaagcaatcgtactt
gctccaacacgtgagctagcgattcaggttgcggctgaaatgaagaaccttggtaaaaac
atcaagggtcttaaagttttagaaatctacggtggtgcatctatcgtagatcaaatgcgt
gcacttaaaaacggtgcacacgtagtagttggtactcctggtcgtgtgcaagaccttatc
aaccgtgaacgtctacatctagacgaagttagcactttcgtacttgatgaagcggacgaa
atgctaaacatgggtttcgtggacgacgtaactgcaatcatggagcacgctccagaatct
gcacagcgcgttcttttctctgcaactatgcctccaatgcttaaaaacattgttgagcgt
ttcctacgtgatcctgtaactatcgacgttgctggtaaaaaccacactgtagacaaagtt
caacaacagttctgggtagtgaagggtgtagagaaagatgaagctatgtctcgtcttctt
gaaactgaagaaactgacgcgtcaatcgtattcgtacgtactcgtcaagacactgagcgt
ctagctgattggctatctgcacgtggctttaaagctgctgcactacacggtgacattcct
cagtctctacgtgaacgtactgttgatcacatcaaacaaggtgttatcgatatcctagtt
gcaactgacgttgttgcacgtggtcttgatgttccacgtattactcacgtatttaactac
gacatcccattcgatgttgagtcttacatccaccgcatcggtcgtactggtcgtgctgga
cgtaaaggtaaagcgatccttctagttcgcactaaccaaatccgtatgcttcgcactatc
gagcgcgtaactaagtcatctatggaagaaatccaacttcctctacgtgaccaagttgca
gaagctcgtctaaacaagctagcggctgaactggaagcagagaaagagcacaaagctcta
gacaagttcgcagagcttgttgagaagctacaaacttctctagaaatcgacccaacaatg
cttgctgcaatgcttcttaagcgtcagcaaggtaaacgcccgctattctacattggcgaa
gacccaatgattgaagcgattgagcgtgacaagcaacgtcgtaaagagcgccgtgaaggt
ggtcgtgacggtggtcgcaacttcaacaaccaagactgggatacttaccagcttcaagtt
ggtcgcgagcaaggcgttcaagttaaagacatcgttggtgctcttgcaaacgaactaggt
ctaggtaaaggctctatcggtgcaatcaagctagcacaaggtcacacattcgttcagcta
cctaaagcaatgacttcagatgctgcgaacaagctaagcaagctacgtatccgtcaacaa
gatgttggtgctgtagtatgtgacttcgatgacttccgtgagtctcgtggtggtcgccgt
gacggtggtcgtcgcgatggcggtcgtcgtgatggcggcggttaccgtggcaaccgtgat
ggcaaccgcgaaggtggtcgtcgtgaaggcggtcgtcgcgaaggtggcttccgtggtaac
cgtgacggcaaccgcgatggtaaccgtgaaggtggcgaacgtcgtttcgatcgtaaccgt
ggtggtgaccaccgtggtgcacaccgtggtgaacgtggtcacggccgtggtcgtcgctca
caagaagcataa
DBGET
integrated database retrieval system
