Vagococcus hydrophili: G7082_07625
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Entry
G7082_07625 CDS
T07081
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
vhy
Vagococcus hydrophili
Pathway
vhy03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
vhy00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
G7082_07625 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vhy03021
]
G7082_07625 (rpoC)
03400 DNA repair and recombination proteins [BR:
vhy03400
]
G7082_07625 (rpoC)
Enzymes [BR:
vhy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
G7082_07625 (rpoC)
Transcription machinery [BR:
vhy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
G7082_07625 (rpoC)
DNA repair and recombination proteins [BR:
vhy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
G7082_07625 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
QIL48371
UniProt:
A0A6G8ATF9
LinkDB
All DBs
Position
1510067..1513717
Genome browser
AA seq
1216 aa
AA seq
DB search
MIDVNKFESMQIGLASSEKIRSWSYGEVKKPETINYRTLKPERDGLFCERIFGPTKDWEC
ACGKYKRIRYKGIVCDRCGVEVTRSKVRRERMAHIELAAPVTHIWYFKGIPSRMGLVLDM
SPRALEEIIYFASYVVTDAGDTSLEVKQLLTEREYREKRQQYGQGFQAGMGAEAIKRLLE
NVDPEKEVVELKEELKTAQGQKRTRAIRRLDILEAFRTSGNDPSWMVMDVVPIIPPDIRP
MVQLEGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPGIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPFLKMYQCGLPKE
MAIELFKPFVMHELVKREIASNIKNAKRQIERQEDAVWDVLEDVIREHPVLLNRAPTLHR
LGIQAFEPVLVEGRAIRLHPLVCEAYNADFDGDQMAVHVPLSEEAQAEARLLMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTMEEPGHIGEGMIFRNLDEVVIAWRNGYVHLHSRIGLQ
TSSMPEKPFTEWQRDRILITTAGKVIFNEIMPPEFPYLNEPTDYNLTVQTPDKYFVEAGT
NIPEHIKAQEKIGPFKKKNLGNIIAEVFKRFKITETSKMLDRMKDLGYKHSTYAGMTVGI
ADIVVLHEKQGMIEEAHKQVDAVTKQFRRGLITDDERYERVIAIWNATKDAIQVKLMESL
DDRNPIFMMSDSGARGNISNFTQLAGMRGLMAAPNGRIMELPIVSNFREGLTVLEMFIST
HGARKGMTDTALKTADSGYLTRRLVDVAQDVIIRETDCGTDRGLDIKAVKEGNEVIETLE
ERMLGRYTRKSVKHPETGATIIGAGDIITEDISKEIIEAGIEEISIRSVFTCNTKHGVCK
HCYGRNLATGSEVEVGEAVGTIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEIF
EARNPKGVAIVSEVAGEVIEISEDATDRTKEVIVKGITDTRTYSVPYTSRMKVAEGDIIE
RGTPLTEGSIEPKHLLTITDVLTVENYLLKEVQKVYRMQGVEIGDKHIEVMVRQMLRKVR
IMDPGDSDILPGTLIDINEFKERNYNTLVAGGTPATGRPVLLGITKASLETNSFLSAASF
QETTRVLTDAAIRGKKDHLLGLKENVIIGKIIPAGTGMPKYRNMEPKEVGVASENVYSIS
DIEAQMAAADALKSQD
NT seq
3651 nt
NT seq
+upstream
nt +downstream
nt
ttgatcgatgtaaataaattcgaaagtatgcaaatcggcttagcttcttctgaaaaaata
agaagctggtcatacggtgaagtaaaaaaaccagaaacaatcaattaccgtactttaaaa
ccagaacgtgacggtcttttctgtgaacgcattttcggtcctacaaaggactgggagtgt
gcttgtggaaaatacaaacgtatccgttataagggtattgtctgtgaccgctgtggggtt
gaggtaactcgctctaaagttcgtcgtgagcgtatggctcatatcgaacttgcagcgcca
gttacacatatctggtacttcaaaggtattccaagtcgtatgggtcttgtattagatatg
agcccacgtgctttagaagaaattatctactttgcgtcttacgtagtaacagatgcagga
gatacgtcattagaagtaaaacaattattaacagagcgtgaataccgtgaaaaacgtcaa
caatatggacaaggtttccaagcaggaatgggtgctgaagccattaaacgcttgttagaa
aatgttgatccagaaaaagaagttgttgagttaaaagaagagttgaaaacagctcaaggt
caaaaaagaacacgtgcgattcgtcgtctagatattttagaagctttcagaacttctgga
aatgatcctagttggatggttatggacgttgtgccaatcatcccgccagatatccgtcca
atggttcaattagaaggtggccgttttgcaacaagtgatttgaacgatttatatcgtcgt
gtgattaaccgtaataaccgtttgaaacgtttattagacttaaacgcaccaggaattatc
gttcaaaatgagaaacgtatgttacaagaagctgtggatgctttgattgataatggtcgt
cgtggccgtccagtaactggaccaggtaaccgcccacttaaatctttatcacacatgctt
aaaggtaaacaaggtcgtttccgtcaaaacttacttggaaaacgtgttgactattctggt
cgttcggtaatcgttgttgggccattcctaaaaatgtaccaatgtggtttaccaaaagaa
atggcgattgaattatttaaaccattcgttatgcacgaattagttaaacgtgaaatcgca
agtaacattaaaaatgctaaacgccaaattgagcgtcaagaagatgctgtttgggatgta
ttggaagatgttattcgtgaacatccagttttacttaaccgagcacctacgttacataga
cttggtatccaagcgtttgagcctgttttagttgaaggtcgcgcgattcgtcttcaccca
ttagtatgtgaggcttacaatgccgatttcgatggggatcaaatggcggttcacgttcct
ttaagtgaagaagcacaagcagaagctcgtttacttatgttagcggctcaaaatatcctt
aaccctaaagatggaaaaccagttgttacaccatctcaagatatggttcttggtaactac
tatttaacaatggaagagccaggacatattggtgaaggaatgatctttagaaacttagat
gaagttgttatcgcatggagaaatggctacgtccacttacattctcgtattggtttacaa
acaagctcaatgcctgaaaaaccattcactgaatggcaacgtgatcgtatcttaattaca
actgctggtaaagttatctttaatgaaattatgccaccagaattcccatacttaaatgaa
ccaactgattataacttaacagttcaaactcctgataaatactttgtagaagctggaaca
aatattccagaacacatcaaagctcaagagaaaattggaccatttaagaagaaaaactta
ggtaatatcattgctgaagtctttaaacgcttcaagattactgaaacttctaaaatgtta
gatagaatgaaagatttaggttacaagcactcaacatatgctggtatgactgtagggatt
gcagatattgtagtcttacatgaaaaacaaggtatgattgaagaagcccacaaacaagtg
gatgctgtaacaaaacaattccgtcgtggtttaatcactgatgatgaacgttacgaaaga
gtcattgctatttggaacgcaacgaaagatgctatccaagttaagttaatggaaagttta
gacgatcgtaacccaatcttcatgatgagtgactctggtgcccgtggtaatatttccaac
tttactcagcttgctggtatgcgtggacttatggctgcaccgaatggtcgaatcatggaa
ttacctatcgtatctaacttccgtgaaggattaacggtcttagaaatgtttatctctacc
catggtgctcgtaaaggtatgacggatacggcccttaaaacagccgattcaggttactta
actcgtcgtttagttgacgtggcccaagatgttattattcgtgaaacagattgtggaact
gaccgtggtttagatattaaagcagttaaagaaggtaatgaagttattgagacactagaa
gagcgtatgttaggacgttacactcgtaaatcagtgaaacatccagaaacaggcgcaact
attattggtgcaggtgacattattactgaagatatcagtaaagaaattattgaagcgggt
attgaagaaatttcaatccgttcagtctttacatgtaatacaaaacatggtgtatgtaaa
cactgttatggccgtaacttggcaacaggttctgaagttgaagttggggaagcagttggt
acaattgccgctcaatcaatcggtgagcctggtactcagttaacaatgcgtactttccat
acgggtggggttgccggagatgatattactcaaggtttacctcgtatccaagagatcttt
gaagcacgtaatcctaaaggggttgccattgtttctgaagttgctggagaagttattgaa
atttctgaagacgcaacggatcgtacgaaagaagttattgttaaaggtataacagataca
agaacatacagcgttccttatacatctcgtatgaaagttgctgaaggtgacattatcgag
cgtggaacaccattaacagaaggttcaattgaaccaaaacacttattaacaattactgat
gtgttaactgtggaaaactacctacttaaagaagtacaaaaagtgtaccgtatgcaaggg
gtagaaatcggcgataaacatatcgaggtaatggttcgtcaaatgttacgtaaagttcgt
atcatggatccaggtgattctgatatcttaccaggtacattgattgatattaatgagttt
aaagaacgtaactacaatactttagtagccggtggcacaccagcaactggtcgtccagtg
ttattaggtattacaaaagcgtctcttgaaacaaacagtttcttatcagcggcttcattc
caggaaacaacacgtgtgttaacggatgcagcaattcgcggtaagaaagaccacttactt
ggacttaaagaaaatgttatcatcggtaagattattcctgccggtactggtatgccaaaa
taccgtaacatggaaccaaaagaagtgggcgttgctagcgaaaatgtttacagtatcagt
gacattgaagcacaaatggcagcagcagatgcattaaaatcacaagactaa
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