Vagococcus hydrophili: G7082_12510
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Entry
G7082_12510 CDS
T07081
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
vhy
Vagococcus hydrophili
Pathway
vhy02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
vhy00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
G7082_12510 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vhy03021
]
G7082_12510 (rpoD)
Transcription machinery [BR:
vhy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
G7082_12510 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
Exonuc_VII_L
DUF6568
MCM4_WHD
Motif
Other DBs
NCBI-ProteinID:
QIL49255
UniProt:
A0A6G8AWD0
LinkDB
All DBs
Position
complement(2550006..2551127)
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AA seq
373 aa
AA seq
DB search
MSEKNIKNQEAYKKELNKFIKENKLKGSVYYNDLTNKLATPFELNSDDMDDLIQKVEDAG
ISVVDEKGDPSEHSLKVTTKKQAKEKPEEEDLIAPAGVKINDPVRMYLKEIGRVSLLSAD
EEVALALRIKEGDPEAKQELAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKF
DHEKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPT
PEEIGAEMELTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPAEHAAYEL
LKEQLESVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR
HPSRSKQLKDFLE
NT seq
1122 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaaaaaaacattaaaaatcaagaagcgtacaaaaaagaattaaataaatttata
aaagaaaataaattaaagggttcagtttattataatgatttaacgaataaattggcgaca
ccttttgaattaaactcagatgatatggacgatttaattcaaaaagttgaggatgctggt
atcagcgtcgttgatgaaaaaggcgatccaagtgaacatagtttgaaagtaacaactaaa
aaacaagcaaaagaaaaacctgaagaagaagatttaatcgctcctgctggtgtaaaaatt
aatgaccctgttcgtatgtatttaaaagaaattggtcgtgtgtcgctcttaagcgccgat
gaagaggtagctttagctttacgtattaaagaaggtgacccagaagctaaacaagaatta
gccgaagccaacttacgtttagttgtaagtatcgccaaacgttatgtgggtcgtggtatg
cagttcttagatttaatccaagaaggaaacatgggattaatgaaggctgtggagaaattt
gaccacgaaaaaggattcaaattctcgacttacgcaacttggtggattagacaagcgatc
actcgtgccattgccgatcaagcaagaacaattcgtatcccagtgcatatggtagaaaca
attaacaaattaattcgtatccaacgtcaattactacaagacttaggacgcgaaccaaca
ccagaagaaattggtgctgaaatggaattaacacctgagaaagttcgcgagattttaaaa
attgctcaagaacctgtttcactagaaacaccaatcggggaagaagatgattctcattta
ggagatttcattgaagatcaagacgcaacaagtccagctgaacatgctgcttatgagttg
ttaaaagaacaattagagagtgttttagatacattaactgatcgtgaagaaaacgtctta
cgcttacgttttggtttagacgatggtcgtacaagaactttagaagaagttggtaaagta
tttggtgtaactcgcgaacgtatccgtcaaatcgaagcaaaagctttaagaaaattaaga
catccaagtcgttctaaacagttaaaagactttttagaataa
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